| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1092 |
|---|
| Symbol | |
|---|
| ID | 8709995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 1256626 |
|---|
| End bp | 1257372 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 646483183 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003374293 |
|---|
| Protein GI | 283783539 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0670] Integral membrane protein, interacts with FtsH |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACT TTACTCAAGA TTATTACAGA AGCGGTGCTC CTGAAGTTAT TGACACTCAG
GCAACATATG CTTTTGAAGA AGCAAAAAGA GTTTCAGTAG GACGCACTTA TGGCGAAATG
ACGCTTGGAT TGATTGTTAC AACTCTTGTG GCACTGTTCA CTCAGAGCGG TAATTTCTGG
CTTAGATTTA TGTTTGCAAC CCGCGGATGG GGTTGGATAA TGTTGGCAAT TGCTCAGGTT
GTGATAGCAG TTGTTCTTGG AACACGCTTA ATGAAAATGA GTGAGACAAC AGTACGAGTT
TTGTTCTATG CTTATGCTGC TTTAACAGGA TTTACTTTAA GCTCAGTCTT TCAAGTATTT
AGCCTTGGAT CTGTGGCATT AGTATTTGCT TTAACTGCAG GATTCTTCCT GTGCTTGACA
ATGCTTGCAC TTACTACAAA AAAGGATTTG CTTAAAGCTG GTCCAATTTT AATGGTTGCA
TTACTTGTAT TCGTTGTTGC GCAAATTATT ATTTCGTTTA TTGGGCAAGA TACTGGAACA
ATGCGTCTTA TGGCTGGAAT TGGCATCGTT ATTTTTGCAG GTTTAACAGC TTACGATGCT
CAGCAAACTC GCGCATTACT TGCACAATAT GAAAATCAGC CTGAAATGGT TAAGAAAGTA
TCTATTTTCT GCGCATTCCA GCTGTTCTTG GACTTCATTA ACATGTTCAT CTACTTGCTA
GAGTTGCTTG GAGATAATAG AGATTAG
|
|---|
| Protein sequence | MTNFTQDYYR SGAPEVIDTQ ATYAFEEAKR VSVGRTYGEM TLGLIVTTLV ALFTQSGNFW
LRFMFATRGW GWIMLAIAQV VIAVVLGTRL MKMSETTVRV LFYAYAALTG FTLSSVFQVF
SLGSVALVFA LTAGFFLCLT MLALTTKKDL LKAGPILMVA LLVFVVAQII ISFIGQDTGT
MRLMAGIGIV IFAGLTAYDA QQTRALLAQY ENQPEMVKKV SIFCAFQLFL DFINMFIYLL
ELLGDNRD
|
|---|
| |