| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1090 |
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| Symbol | miaA |
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| ID | 8710079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1254476 |
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| End bp | 1255489 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646483181 |
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| Product | tRNA isopentenyltransferase |
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| Protein accession | YP_003374291 |
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| Protein GI | 283783537 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
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| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGAAA ATAAGCAGGA TAATATTCCT AAAGTAATTT CAATAGTTGG TCCTACGGCT
TCAGGCAAAA CTAGTCTTGG TATTGCGCTT GCGAAAAAAT TAGCTGAGCG TGGGATTCGT
GCGGAAATCA TCAACGCAGA CGCGTATCAA ATGTATCGTT ACATGGATAT TGGCACGGCT
AAGGCGAGTG CGCAGGAGCA GGCGGAAGTA CCACACCATT TGCTTGACAT AATTGATCCT
GAAGAAACGA TGACGGTTGC GCGATTTCAA GTTTTGGCCA GACAGTGTAT TAGTGAGTTG
CAATCGCGTG GTGTGAGGCC GATTTTAGTT GGAGGATCGG GATTGTATGC TCGTGCTGCT
GTGGATGATA TTACATTTCC AGGCACGGAT GAGTCTATTC GTGCAGCTTT GGAGGAGCGC
GAGCACAAAG AGGGAGCGAG TGCGCTGTTT GATGAGTTGC AACAAAAGGA TCCGGTTGCT
GCGGCTCATA TGGATGCGCG CAATCCGCGA CGTACAATTC GCGCGCTTGA AGTGATTGAG
CTTACGGGAA AGCCTTATTC CGCAACGCTT CCGAAGTATA AGTATGTGAT TGATTGCGTG
CAAATTGGCT TAGATTTGCG TCGTGAAGAT TTAGATAAGC GCGTGGATTT ACGTACGCAA
ATTATGCGTG AGCAGGGTTT TGTGGATGAG GTGCGCGCGA TTCGAGGGCG ATTGGGTGTG
ACTGCATCTC GTGCTCTTGG CTACCAGCAG ATTATGGATT ATTTGGATGG CGTGTGGAGA
GAGGATGAGG CTTTTGCGGA TATTGCACAA AAAACTCGAC GACTTGCACG CAAACAAATG
GGTTGGTTTG GTAGGGATGC TCGCATCCAC TGGTTGGACG CGTTGCGACC GGATCTTGCG
GAAGCTGCGC TCGCGATTGT TGATGCTGCG GATGCGGGGG AGTTTGATTG CAATAGTTCT
GATGCTACTG AGCACGCTAC TCAGCACCAT CTCGGAGATG CTTTCGAAGC TTAA
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| Protein sequence | MSENKQDNIP KVISIVGPTA SGKTSLGIAL AKKLAERGIR AEIINADAYQ MYRYMDIGTA
KASAQEQAEV PHHLLDIIDP EETMTVARFQ VLARQCISEL QSRGVRPILV GGSGLYARAA
VDDITFPGTD ESIRAALEER EHKEGASALF DELQQKDPVA AAHMDARNPR RTIRALEVIE
LTGKPYSATL PKYKYVIDCV QIGLDLRRED LDKRVDLRTQ IMREQGFVDE VRAIRGRLGV
TASRALGYQQ IMDYLDGVWR EDEAFADIAQ KTRRLARKQM GWFGRDARIH WLDALRPDLA
EAALAIVDAA DAGEFDCNSS DATEHATQHH LGDAFEA
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