Gene HMPREF0424_1085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1085 
SymbolprmC 
ID8709958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1242308 
End bp1243222 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content48% 
IMG OID646483177 
Productprotein-(glutamine-N5) methyltransferase, release factor-specific 
Protein accessionYP_003374288 
Protein GI283783534 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2890] Methylase of polypeptide chain release factors 
TIGRFAM ID[TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAAC TTTTGCGAGT TTTGCGCGAT GCTGTTAAAA AGCTTGATTC TGCAGGCGTG 
GAGTCAGCAG AATATGATGC ACGCTTGCTG CTGGCTCATG CTTGCGGCGT AAGCTTAGCT 
GAGCTGAACA AGGCGCTAAT ACTTGGCGAT TTAACCGATT TTTCGCAAGA TTATGCTAGT 
AAATATAGCG ATTTTATATC TAGGCGTGCT TCTCGTGAGC CGTTGCAGCA TATTGTTGGT 
CGCGCGCCTT TTCGCTACTT GGATTTGCAA GTTGGTAAGG GCGTTTTTGT GCCGCGGCCG 
GAAACGGAAA TTGTTGTTGA AGCTGGATTG GATTGGCTTA GAGAGTCTGG TATTAGCAAG 
CTGACGGTAG TCGATTTATG CGCCGGATCG GGCGCAATTG GATTGTCGAT TGCGGCGGAA 
GTTGCAGACG CGCAAGTATG GGCTGTAGAA AAATCTCCTG AAGCTTTCCA ATATTTGCAA 
AAAAATTTCG AAGAAACTGC AAAAAAGTGG GAAAATATTC AGATTTTCAG TCGCTATCAT 
GCTGTGCTTG CAGACGCAAC CAAATCGCAT ATTTCGGATT GCACGCCGGA ACTTCACGCA 
ATTTGCGGCA AAGTAGATTT AGTAATAACG AATCCGCCTT ACGTGCCGGA AAGTCAAGTG 
CCAGAACAAG TTGAAGTGCG AGAGTACGAT CCGCCGGTTG CGCTTTATGG TGGTTCTGCG 
GACGGCTTGC TTATTCCGGA GCAGATTATG CGTGCGGCTT TTGCGCTGCT TAAGTCTGGG 
GGAGCGATGG TTATGGAGCA CGATATTTCG CAAGGAGATG CGCTTAAAAA GTATGCGGAA 
AGCGTAGGTT TTTCGCGTGC GCGCGTTGGA AATGACTTAA CTGGCAGACC GCGATACACT 
TTTGCGCAAA AGTAA
 
Protein sequence
MQELLRVLRD AVKKLDSAGV ESAEYDARLL LAHACGVSLA ELNKALILGD LTDFSQDYAS 
KYSDFISRRA SREPLQHIVG RAPFRYLDLQ VGKGVFVPRP ETEIVVEAGL DWLRESGISK 
LTVVDLCAGS GAIGLSIAAE VADAQVWAVE KSPEAFQYLQ KNFEETAKKW ENIQIFSRYH 
AVLADATKSH ISDCTPELHA ICGKVDLVIT NPPYVPESQV PEQVEVREYD PPVALYGGSA 
DGLLIPEQIM RAAFALLKSG GAMVMEHDIS QGDALKKYAE SVGFSRARVG NDLTGRPRYT 
FAQK