Gene HMPREF0424_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1081 
Symbol 
ID8709210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1237633 
End bp1238340 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content47% 
IMG OID646483173 
Productexonuclease 
Protein accessionYP_003374284 
Protein GI283783530 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAG CTAAGGAAGA TCTTACGTTT ACGCCGGAAG AGTCGCGCTT AATTTGGATT 
GATTGCGAGA TGACTGGACT CGATATTTTC CATGACGAAT TATGCGAAGT ATCTGTAGTT 
CCAACTGATT TTAATTTGAA AGTTTTGGAC GACGGTATTG ATTTAGTGAT TAAGCCAAGC 
GACGCTGCTG TGGCTCATAT GAACGATTTT GTGCGCAATA TGCACACTTC TTCTGGACTT 
GTTGACGAGT GGAATAAGAA CGGTTTGTCT TTGGAAGAGA CGCAAAAGCA GGTTGTTGAG 
TACGTAAAAC GCTTCCTTCC AGCTCGCGGA AAAGCTCATC TTGCTGGAAA CTCAGTCGGC 
TCCGACAAAA AGTTCCTCGA CCGTTACATG CCAGATTTAA TGGCAAATCT GCACTATCGT 
GTAATAGACG TAAGCACGTT GAAGGAAATT TCGCGCAGGC TTTACCCGGA CGTTTACCGC 
AATAAGCCGG CAAAACATGG CGGTCACCGT GCGCTCGCGG ATATTATTGA GTCGATTGAC 
GAGCTTCGTT ATTACCGCGA TATGATGTTC GTTCCAGCTC CAGGCCCAAG CGAGTCTCAA 
GCAAAAGCCG GTGCGCAACA CATTGAAAGC ACGAGCTTGC TTCGTGACTA TGAGCGTCGC 
GGAGAGGCGC TAGAAGACGT AAATTCCGCA GAAAAGCGCG ACTACTAA
 
Protein sequence
MAEAKEDLTF TPEESRLIWI DCEMTGLDIF HDELCEVSVV PTDFNLKVLD DGIDLVIKPS 
DAAVAHMNDF VRNMHTSSGL VDEWNKNGLS LEETQKQVVE YVKRFLPARG KAHLAGNSVG 
SDKKFLDRYM PDLMANLHYR VIDVSTLKEI SRRLYPDVYR NKPAKHGGHR ALADIIESID 
ELRYYRDMMF VPAPGPSESQ AKAGAQHIES TSLLRDYERR GEALEDVNSA EKRDY