Gene HMPREF0424_1073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1073 
SymbolprfB 
ID8709497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1225513 
End bp1226649 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content47% 
IMG OID646483165 
Productpeptide chain release factor 2 
Protein accessionYP_003374276 
Protein GI283783522 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID[TIGR00020] peptide chain release factor 2 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGAAT TTGATTTTTC CCAAGCATTA AATGATGTTG AAGCAAAGTA TTCTTCGATT 
TCTAAAGCAC TAGACGTCGA TTCGTTGAAG GCTACGATTG CTGATTTAGA AAAGCAGGCT 
GCAGAGCCTG GACTTTGGGA TGATTCTGAG CATGCTCAGC AGGTTACGAG TAAGCTTTCC 
GCGGCTCAGT CTCAGTTGAA GCGTTTGCAA GCTGTAGATC AGCGCATTGA AGATACTAAG 
ACTTTAATTG AGCTTGGCCA AGAAGAAGGC GATGCTGATT CTATGAGCGA GGCTCAAGAA 
GAGCTTGGAA ATATTGCTCA CGAGTTGGAC GATATGGAGG TTCAGACTCT TCTTGACGGC 
GAATATGATG CTCGTTCTGC AGTTGTTACG ATTCGCTCTG GTGCGGGCGG CGTGGATGCT 
GCTGATTTTG CTCAAATGCT TCTTCGTATG TACTTGCGCT GGGCTGAGCG AAACGGTTAC 
AAAACTAAGA TGATGGACAC GTCTTATGCG GAAGAAGCTG GTATTAAATC CGCTACTTTC 
CAAGTGGATG CCCCGTACGC GTATGGTCGT CTTTCTGTAG AAGGCGGTAC TCACAGAATG 
GTTCGTATTT CGCCATTCGA TAATCAAGGC CGTCGACAGA CTGGCTTTAG CGCAGTGGAA 
GTAATCCCTT TGGTTGAAGC TACAGATCAT ATTGATATTC CAGATTCGGA TATTCGCGTG 
GATACTTTCC AGGCTTCAGG GCCAGGAGGT CAGGGCGTGA ACACTACGTA TTCTGCTGTT 
CGTATTACGC ATTTGCCAAC CGGCTTGGTT GTTTCTATGC AAGATGAGCG AAGTCAGATT 
CAGAACCGCG CCGCTGCAAT GGCAGTTTTG CAATCGCGTT TGCTTGTGCT TAAGCATGCT 
GAGGAAGCTG CAAAAAAGAA GGAACTTGCT GGAGATATTA AGGCAAGTTG GGGAGATCAA 
ATGCGCTCTT ACGTGCTTCA CCCTTATCAG ATGGTGAAGG ATTTGCGCAC TGGTTACGAA 
ACTTCACAAA CTCAAGCTGT TTTTGACGGC GATATTGACG GTTTTATTGA AGCTGGCATT 
CGTTGGCGTC ACGAGCAGCG AGTTGCAGCT CAAAAAGAAG CTGAAGCAGA ATCTTAA
 
Protein sequence
MAEFDFSQAL NDVEAKYSSI SKALDVDSLK ATIADLEKQA AEPGLWDDSE HAQQVTSKLS 
AAQSQLKRLQ AVDQRIEDTK TLIELGQEEG DADSMSEAQE ELGNIAHELD DMEVQTLLDG 
EYDARSAVVT IRSGAGGVDA ADFAQMLLRM YLRWAERNGY KTKMMDTSYA EEAGIKSATF 
QVDAPYAYGR LSVEGGTHRM VRISPFDNQG RRQTGFSAVE VIPLVEATDH IDIPDSDIRV 
DTFQASGPGG QGVNTTYSAV RITHLPTGLV VSMQDERSQI QNRAAAMAVL QSRLLVLKHA 
EEAAKKKELA GDIKASWGDQ MRSYVLHPYQ MVKDLRTGYE TSQTQAVFDG DIDGFIEAGI 
RWRHEQRVAA QKEAEAES