| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1071 |
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| Symbol | |
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| ID | 8709653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1223063 |
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| End bp | 1223986 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483163 |
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| Product | efflux ABC transporter, permease protein |
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| Protein accession | YP_003374274 |
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| Protein GI | 283783520 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG2177] Cell division protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.805249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTAC GATTTATTTT TTCCGAAACT TGCATTAGTT TGCGTCGTAA TGTTTCGATG
ATTCTTTCGG TTATGCTTGT AACGTTCATT TCTTTCCTTT TTATTGGTGT TTCAGTGCTT
ATGCAAGCGC AGATTACCAA GGCAAAAGGT GACTGGTATG ACAAAGTAGA AGTGGTTGCC
TGGCTGTGCC CGGATGGAAC TAGCCAATCT CCTTCTTGTG CTTCTGGAAA AGCACCTACT
GATGCCGAAA TTGTAAAATT GGAGCATATT ATTCACCAAG AATTAGGCGA TGATGTTTCA
AATATCACTT ATGTTAGCCG CAATGAATTT TATAAAAACA CATTCTTAAA GCAATATCCT
AACGGAATGT ATCAAGGACG TACTTTAACT GCGGCAGACA TGCAAGATTC GTTGCGCTTG
AAGCTTACTA ATCCTATGAA ATATCAGGTT GTCTCAGAAG TTCTTTCTGG ACGCGATGGT
GTGGAAGAAG TTGTTGATCA GCGTCAGATT TTTGATCCTG TTTTCAGTGT GCTTAATCGC
GCTACTGTTG TGACAATTGT GCTTGCAGCA GTTATGGTTG TTGTAGCGAT TATGCTTACT
GGCACTACGA TTCGAATGTC TGCTGCTAGC CGTCGTCAAG AAACCGAAAT TATGCGCTTA
GTTGGTGCCT CTAACTGGAC TATTCGTATG CCGTTTCTTC TTGAAGGAGC GTTCGCGTCG
TTTGTGGGTT CTTTACTTGC TGGTGCTGCG CTAAGTTTAG TAGTTAAAGT TTTTGTAACT
GATTGGCTTG CGCAGAATGT GCGTTGGATG CCATTTGTTA CTCAAACAAC TGTGTGGCTA
TGCGTTCCAA TACTTGTAGC TGGTGCAGTA GTGTTATCTA TAGTTGCTTC TGCTATTGCT
TTGAGGCGAT ACTTAAAAGC TTAA
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| Protein sequence | MRLRFIFSET CISLRRNVSM ILSVMLVTFI SFLFIGVSVL MQAQITKAKG DWYDKVEVVA
WLCPDGTSQS PSCASGKAPT DAEIVKLEHI IHQELGDDVS NITYVSRNEF YKNTFLKQYP
NGMYQGRTLT AADMQDSLRL KLTNPMKYQV VSEVLSGRDG VEEVVDQRQI FDPVFSVLNR
ATVVTIVLAA VMVVVAIMLT GTTIRMSAAS RRQETEIMRL VGASNWTIRM PFLLEGAFAS
FVGSLLAGAA LSLVVKVFVT DWLAQNVRWM PFVTQTTVWL CVPILVAGAV VLSIVASAIA
LRRYLKA
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