| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1070 |
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| Symbol | |
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| ID | 8709103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1221510 |
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| End bp | 1222916 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483162 |
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| Product | CHAP domain protein |
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| Protein accession | YP_003374273 |
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| Protein GI | 283783519 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3942] Surface antigen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.518455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAG ATCGACATAG CATGTATGCA ATTCGACGCA CTCACACTGT AGTGAGTTTA
ATAGTTGCTA TTTCAATGAT GTTTGCTGGT GTTGCTGGTG CATTATTTAA TGCGTCTACA
GCAAGTGCTG TCAACATGAA GGAATATAGG CGCAAAATAC AACGAAACGA GAATTTGAAG
CACCAACTTG CTGGTGTAAG TAAACAACTT GCAAATAAGA TCATTGAATT GAATGATTTA
AATGAGCATA AAATTCCAAA TCAAATACGA GCTGCTCAAC AAGCAGAAGA GCAAGCTTCT
CAGGCGCGCA GTCTTGTAGA ATCAACGCAG CAGCGTCTAG AGTCTGCACA AAAAGATAAG
CGTGATTTGG AAGAGAAAAT TAAAAAAACT GGTGAAGATT TTGATGATGC TAAGGCTGCT
GTAGCACAGC TTGCTCGTAA GAGTTTCCAT GGTTCTCAGG CATCTAATGT TATGGATATT
GTGACTAAAT CAACTACTAC AGAACAGTTT GTTGGAAAGT TACAATCCGA GGCTGCTGTT
GCTAGAAGTG AAGCAAATGC TGCTAATGAT GCTGCTATTA AGTTGAATAC TTCTATGAAT
CGTCGTCAGC GTTTGGCTGC TATTGAAGCA GAAATAACCA AGTTAAAGCA GCAGGCGGAT
GTTCAAGCGC AAAGTGCTCA AATCGCTGCG AAAGCCGCCA ATGATCGCAA AAAGTCCTTG
CAAAGTTTGC GAGATCATGG TGAAGAGATT CGTAAGCAGC TGGAAGGTCA AAAGAGTAGT
TTGACTTCTC AGTCTGCGCG TGAGGCTGCA GAAATTATAG CAATGAAATC GGCCATCGAT
GCTCAAGCGC GTGCTCTTGC TAATAAGTCA TTCGCTAAAG CTGATCCGAA TGCTGGTAAT
CGCCAGCAAT TGAATGGAAG CTCTGGAAAG AATGTTTACC TTCCTCCGAT GCAACTTTCT
AATGGTGCTG CTAATGGTAT GAATTATACT GTTCCTGGAA ATTGCGCAGA AGGTTCTAAG
TTCTGCTACG GGCATAATAC TGGAAACACT GTTGGTGGTT CTGCTTATCC TGCTCGTCAA
TGCACGTTAT GGGCTTATTT GCGTCGTTCG CAACTTGGTC TGCCAGTTGG CTCCTACATG
GGTAATGGTG CTGAGTGGGC GAATACTGGT CGTAGGTTTG GATATTTAGT TAATAGAATT
CCACATGTTG GTGCTGTTAT GGTGTTTGCT CGCGGTCAAC GCGTCGGCAA CTGGAATGCT
GATTGGCAAT ATGGACATGT TGCGGTTGTG GAACGTGTGA ATGCTGATGG ATCAGTTCTT
ATTTCTGAAG GTGGAACTGG TTTTTCGACA TTCCCTGCTT ATGAAACTAT TTATAATCCA
GGCGATTACG AGTATGTGCA TTATTAA
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| Protein sequence | MSEDRHSMYA IRRTHTVVSL IVAISMMFAG VAGALFNAST ASAVNMKEYR RKIQRNENLK
HQLAGVSKQL ANKIIELNDL NEHKIPNQIR AAQQAEEQAS QARSLVESTQ QRLESAQKDK
RDLEEKIKKT GEDFDDAKAA VAQLARKSFH GSQASNVMDI VTKSTTTEQF VGKLQSEAAV
ARSEANAAND AAIKLNTSMN RRQRLAAIEA EITKLKQQAD VQAQSAQIAA KAANDRKKSL
QSLRDHGEEI RKQLEGQKSS LTSQSAREAA EIIAMKSAID AQARALANKS FAKADPNAGN
RQQLNGSSGK NVYLPPMQLS NGAANGMNYT VPGNCAEGSK FCYGHNTGNT VGGSAYPARQ
CTLWAYLRRS QLGLPVGSYM GNGAEWANTG RRFGYLVNRI PHVGAVMVFA RGQRVGNWNA
DWQYGHVAVV ERVNADGSVL ISEGGTGFST FPAYETIYNP GDYEYVHY
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