| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1067 |
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| Symbol | |
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| ID | 8709239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1218548 |
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| End bp | 1219549 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646483159 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374270 |
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| Protein GI | 283783516 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.147797 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATTCTT TAATTGGTAA CTCTGCTAAG AGCAAGTCCG GAGTAGCTAA CTCTGAACGT
ATTTTGCCAG TAAAAAAGCC AGGACCTATT ATTGCCGGAG TCATTGTAGC TGTAATAGCA
TGTTCGCTTC TTTACAGTAT TATTACTAAC CCTCGTTTTG AATGGCAAGT AGTCGGAATA
TATTTAATAA GCGATAACGT GCTTTCTGGT ATTGGCTGGA CGTTACTTCT TACGCTAATT
GCTATGGTAA TTTCAATCGT GTTTGCGGTA GGCTTAGCGA TGATGCGCAA GTCAGTTAAT
CCTGTGCTTC GTGGCGTAAG TTGGTTCTTT ATTTGGTTTT TCCGTGGTAC TCCTGTTTAT
ACGCAGCTTG TATTTTGGGG CATGTTTGCA GTGCTTGTGC CGAGAATTAG TATTGGCATT
CCTTTTACTT CTGTAGAATT TTGGTCTATT GATTCTAATG TAATTATGAC TTCTCTTACT
GCTGCTGTAG TTGGTTTGTC TTTGAATGAA TCCGCTTATT TGTCGGAAAT CGTTCGAGCA
GGATTGGAAG CCGTTGATAG TGGACAAGTT GAAGCTGCTA AGGCTCTTGG AATGGGTAGA
GCTTTAACTA TGAGGCGTGT AATTCTTCCT CAAGCAATGC GTATTATTGT TCCTCCGCTT
GGTAACGAAA CAATTGGTAT GCTAAAAACA ACTTCGTTAG TTCTTGCAGT TCCGTTTACT
CTTGAATTGC AATTTGCTAC AAATGCTATT GCTAACCGTA TCTATAAACC AATTCCGCTT
CTTCTTGTTG CGAGTATTTG GTATTTGATT ATTACTTCCA TTTTGATGGT TTTGCAATAC
ATGCTCGAGA AGCATTTTGC TAAAGGTTTT GAAGCAAGAG ATATTGTAAA GCATGCTCAA
CTTAATACTG ATTCTGATCA GCGCGGCGAT CAATCATTAG ATGCTAAACG GAAAAATGTT
AAAGGACGAA ATGATGCTGC TATGCTCGGA TTTAATGCTT AA
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| Protein sequence | MNSLIGNSAK SKSGVANSER ILPVKKPGPI IAGVIVAVIA CSLLYSIITN PRFEWQVVGI
YLISDNVLSG IGWTLLLTLI AMVISIVFAV GLAMMRKSVN PVLRGVSWFF IWFFRGTPVY
TQLVFWGMFA VLVPRISIGI PFTSVEFWSI DSNVIMTSLT AAVVGLSLNE SAYLSEIVRA
GLEAVDSGQV EAAKALGMGR ALTMRRVILP QAMRIIVPPL GNETIGMLKT TSLVLAVPFT
LELQFATNAI ANRIYKPIPL LLVASIWYLI ITSILMVLQY MLEKHFAKGF EARDIVKHAQ
LNTDSDQRGD QSLDAKRKNV KGRNDAAMLG FNA
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