| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1065 |
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| Symbol | glmS |
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| ID | 8709221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1215672 |
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| End bp | 1217579 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646483157 |
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| Product | glutamine-fructose-6-phosphate transaminase (isomerizing) |
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| Protein accession | YP_003374268 |
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| Protein GI | 283783514 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0449] Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains |
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| TIGRFAM ID | [TIGR01135] glucosamine--fructose-6-phosphate aminotransferase (isomerizing) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0809792 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGGCA TTGTAGGATA CGCAGGTTTT GGAAAAGTTT GTGCAAAACC TTTAGAAGTT
TGTTTAGGTG GGTTAGAGCG TCTAGAATAT CGCGGATATG ACTCTTCGGG CGTAGCTTTA
GTTGCTCCTG GGATGAAATG TGCGACTGTG CGAAAGAAAG CTGGTCGTTT ATCTGTTCTT
CGCAACGATA TTGATGCAAA TCCTATGCCT GAGGCGAGTG CAGCTATTGG TCATACTCGT
TGGGCTACTA ATGGTGCTCC TTGTGACATT AATGCGCATC CTCATATTAG TGCAGATGGC
AAAATCGCGC TTATTCATAA TGGCATTATT GAAAATGCTG TTGTATTAAA AGAGCAGCTT
CACGAAGAAG GATACGAATT TTCTTCTCAA ACAGATACTG AAGTTGCTGC AAAATTACTT
GGTAAAATTG CGAATGATAT TGTAGACGAA ACTGGCAAGC CGGATTTATT TACAGCTCTT
CGTCGTACTG CAAAAATGTT AAAAGGAGCT TTCACATTAC TTGCTGTTGA CGTTCGTCAG
CCAGGTATTG TGGCTGCTGT TCGTCACGAT TCGCCGTTGG TTGTAGGTCT TGGAGACGGT
GAATATTTCC TTGGCTCTGA CGTTGCAGCT TTTGTAGCTT ATACGGATCG CGTTTTGGAA
GTTGGTCAAG ATCAAGCGGT GTGCATTGGA GATGTAGATG GCAGCGGCAA AGCATCTTTG
CTTCTAACTG ATTTTGACAA TAATATTGTT GAAAATCCTA CTTGTTTTAC AGTTGACTGG
GATGCGTCTG CTGTAGAAAA AGGCGGTTGG GATTCCTTTA TGGATAAGGA AATTCATGAG
GATCCGCATG CTGTCGCTGA CACTTTGCGC GGGCGTTTTG ACGCTCAGGG AAATATTGTT
CTTGACGAAG TTCATATTAG CCAAGACGTG TTGCGCGCAA TTGACAAAAT TATTGTTGTT
GCTTGCGGAA CGGCAAGTTA TGCCGGATTG GTTGCAAAAT ATGCTATTGA GCACTGGGTG
CGCGTGCCGG TTGAGGTGGA GCTTGCGCAC GAGTTTCGCT ACCGTGACCC TATTTTGACG
CATCGAACAT TGGTGGTTGC AATATCGCAG TCTGGCGAAA CAATGGACAC TCTTATGGCT
TTGCGTCACG CGCGCGAGCA GGGAAGTAGG GTTCTTGCAA TTTGCAATAC GCAAGGTTCT
AGCATTCCGC GCGAATCTGA TGCAGTTCTT TACACGCATG CAGGTCCCGA AATAGCAGTT
GCATCTACTA AAGCTTTTGT TGCGCAAATA GTTGCAGCTT ATATGCTTGG TCTGTTTTTG
GCGCAAGTAA AAGGCACTAT GTATCGCGAC GAAATTCAGC AAATCGTTGC GCAATTAAAA
GAGATGCCGG ATAAAATTCA GCATGTACTT GATGCACAAT CTGAATCAAT TATGAAAGCT
GCTGAGCATA CTCTGGAAGC TAAATCTTTC CTTTTCTTAG GTCGACATGT TGGCTATCCT
GTTGCGCTAG AAGGTGCGTT GAAGCTTAAG GAAATTGCGT ATACCTTTAC TGAAGGTTTT
GCTGCAGGTG AGCTTAAGCA CGGTCCTATT GCGCTTGTAG ATGAAGGTGA GCCGGTAGTT
GTGATTGTGC CATCTTCTCG CGGTCGTGAT GTGCTTCATG CGAAAGTTAT TTCTGGAATT
GAAGAAGTTA AAGCGCGCGG AGCTTTCACT ATAGCTGTTG CAGAAGAGGG TGATCCGGAT
GCTTCTCGCT ATGCAGATAT TGTGTTCTGG CGTCCTAAAT GTGCGACTTT GCTAAGTCCT
CTTGTAGATG TAGTTGCATT GCAATTATTT GCAATGGATA TGGCAAAGTT AAAAGGTTAT
GATGTTGATA AGCCTCGTAA TCTTGCAAAG TCTGTAACTG TTGAGTAA
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| Protein sequence | MCGIVGYAGF GKVCAKPLEV CLGGLERLEY RGYDSSGVAL VAPGMKCATV RKKAGRLSVL
RNDIDANPMP EASAAIGHTR WATNGAPCDI NAHPHISADG KIALIHNGII ENAVVLKEQL
HEEGYEFSSQ TDTEVAAKLL GKIANDIVDE TGKPDLFTAL RRTAKMLKGA FTLLAVDVRQ
PGIVAAVRHD SPLVVGLGDG EYFLGSDVAA FVAYTDRVLE VGQDQAVCIG DVDGSGKASL
LLTDFDNNIV ENPTCFTVDW DASAVEKGGW DSFMDKEIHE DPHAVADTLR GRFDAQGNIV
LDEVHISQDV LRAIDKIIVV ACGTASYAGL VAKYAIEHWV RVPVEVELAH EFRYRDPILT
HRTLVVAISQ SGETMDTLMA LRHAREQGSR VLAICNTQGS SIPRESDAVL YTHAGPEIAV
ASTKAFVAQI VAAYMLGLFL AQVKGTMYRD EIQQIVAQLK EMPDKIQHVL DAQSESIMKA
AEHTLEAKSF LFLGRHVGYP VALEGALKLK EIAYTFTEGF AAGELKHGPI ALVDEGEPVV
VIVPSSRGRD VLHAKVISGI EEVKARGAFT IAVAEEGDPD ASRYADIVFW RPKCATLLSP
LVDVVALQLF AMDMAKLKGY DVDKPRNLAK SVTVE
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