| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1062 |
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| Symbol | |
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| ID | 8709441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1209370 |
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| End bp | 1213053 |
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| Gene Length | 3684 bp |
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| Protein Length | 1227 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483154 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003374265 |
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| Protein GI | 283783511 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR02167] bacterial surface protein 26-residue repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0190621 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGTA GTAGGAAACA TCGTATTCTT TCGACAATTG GTGCCGTTTC ATGCGTAGTC
TCTATGATTT TAAGCGTAAC TGTGCTGCCT GCGATAGCTT ATGCCAACGT AACGAAGAAT
CCATTGTTTG TTGCTGCTAT GGCTGCTGCT GCCGAGAATA ATAGGGGTCA AAATAAGTCG
GGTGAAGGGG GATCTAAAAA GGGAGTTCAA GGGGAAGCTG GTAAAGGTAC TGGTAAAGAA
GTTAAAGGGG ATAAGGCTAA AGGGGTAGAT AAAAAAGAAG GAAACAGGGC AGCTAAAGGG
GAAGCTGTTA AAGATAATGA AGTAGTAGAC AATAAAGGTA GTAAGGGGAA TGGTGAAAAT
CCTAATGGGG GGGGGGCTGT AGATAACGGC AGTGCTGGCA AAGATGCTGG CAAAGATGCT
GGCGATGCTG CCGGGAATGC TGCAAAATCT GGCAAAGACG CTAACAACGC TGACAACAAA
TCTGCCAAAA AAGATGGAAA AGCTGGCAAA GATTGCAGCG CGGGTGGTGT TGAGAAATTA
AGCCTAGATG CAGTTAAAGC ACTTCCTGCT TGCGTGGCTA GTGTCATGGC AACTAATGCA
GATGGAACAA TCAGTACTCT TTCAATCGAA CCTCCATCCG GAGAAAACAA GTGTGCTGTT
AGTGCTGATC AACGCAGTGA TGAGTTTGGT AAAATTATAA ATGAAATAAA AAAACTTGCT
CCTACAGATA GCTCGTTTGG TTTTTACGGT GGCAAAGTGT ATGCGTACGG GCGTTTGTCA
AAATTGGACG GGAAGAATTA TGTAGGTCTT TTTTCAGGGA AAAATATTAG TAACATTGAT
AACATCGAAA AGTTTGATAT AAGTTATGTT ACAGACATGT CCCACCTTTT TAAGGATTCC
TCATTAACTG ATTTTAGTTT TTTGAGTAGC TGGGATGTGA GCAATGTTAC GAACATGCAA
AGCATGTTCG AGGGGTGCAC TGGTTTAGAA GATATTAGCG GTTTGGCTAA TTGGAAGGTT
GACAATGTTA CGAATATGGA GGGCATGTTC GAGGGGTGCA CTAGTCTGAA ATCTCTTAAA
GGGTTGGAAG ATTGGGATGT AAGCAATGTT AGAAGTATGT CTGGAATGTT CGCGTCTGTT
ATTAAGGATC AAGATCAACA TGATGCTTTG AATCCAGTAG ACGGGTATGC AGGTGAGATG
GCGATTGATT CGGTTAAACC TTTACGTAAG TGGAATGTTA GCAATGTTAT GAACATGAAC
AGAATGTTTG AGGGTTGCAC TAGCATAACA GATTTTACTG GTTTGGAAGG TTGGGATACT
AAAAGCGTTG TGGCAATGAT CGGTATGTTC GAATACTGCA AGAGTATGAG TTCGCTTGGA
TTTTTGAAAA AGTGGACTGT AAAGAACGTT GAATATATGA TGGCAATGTT TGCGCTGTGC
GACAAGATTA AAAATACTGA GGGCCTAGAA AATTGGAATG TTAGTAACGT TAAAAAAATG
GATGACATGT TTGCAGAATG CTCTAGCCTC GATAGTATCA GTGGATTATC TAATTGGAAT
ACAAGCGGTA AGAGCAGTAC AAGCAAATTA ACTAGCACGT ATAGAATGTT CGATAACTGC
AGTTTTCTTT CTGATCTTCA ACCTTTGAGC GGTTGGAATG TTGGCAGTGT TACTGACATG
CATGACATGT TTAACAATTG CGGCAGTCTT ACTGGTCTTG AACCTTTGAG TGGTTGGGAT
GTTGGCAGTG TTAAGAACAT GAACAGCATG TTCAGCAGTT GTAATGGTTT AACTAGTCTT
GAGTCTTTGA GTAAGTGGTT GAATGATAAG AGCAGTGTCA CGGACATGAG TAGCATGTTC
AGCGGTTGTA ATAGCTTGAG TGACCTTAAA GGTCTAGAAA ATTGGAATGT CGGCAATGTT
AAGAACATGA GCAGCATGTT CAGCGGTTGC GCTACGGATA TCTACGGTTC TGGAGATGAT
CCTAATCCTA TTGGTATAAA AGGATTGGCT GATATAAGTG CATTAAGTGG TTGGGATGTT
GGCAGTGTCA CGGACATGAG TAGCATGTTC AGCGGTTGTA ATAGCTTGAG TGACCTTAAA
GGTCTAGAAA ATTGGAATGT TGGCAGTGTT AAGAACATGA GCAGCATGTT CAGCCATGAG
GTTAGTGGTT CTGATTTTGA TAAGCTGACT GATATAAGTG GATTGAGTAA GTGGAATGTT
AGCAATGTTA AGGACATGTC TAGCATGTTC AATAGTTGTG TAACGTTGGA GAGTATTAAT
CCTTTGAGCG GCTGGAATGT TAGCAATGTT AAGGACATGT CTAGCATGTT TGCATATTGC
AAAAAACTTA CCGGCGCTGC AGATTTAAGC AAGTGGAATA TTTCAAAAGT TACGAATCTT
AGTTCAATGT TTTCCAATGC AGGAGCAGAA AGCGGCGACA GTCTTATATT AGATTTCAGC
GATAAGGCTT TTACAAAATC GGATACACCT GTATACGCGG ATGACGAAGG GAAGCAGCGT
TACTTTTCTG TTGATAGTAT GTTCAGTGGT TTTAAAGGCA CGCTGATTGC GAATAACTTG
AAGTCTAGTG GTTTTGAGAA TAATCCTGAG GATGATCCTA TCGCAAATTT TGCTAGTGGT
TACATATTCT CCCTCGATGA GAATGGTCAC AGCAATAATA TAGTCGTAAC TAATAATGTT
ACGATTTTAG ATACAATTTC AAACGATGAT GATCTTAAAA AGATTGCATA CTACATTCCT
GTTAAAGCCA AGCTGATGGA GCCTGGAGAT ATAAAAAATG ACAATATGAC ATGTGATTGC
AATAGAGATT CGGGTGGCAC TACTTATACT TACTATGTTC CTGCACTGTA TAATTCGAGT
AATTTAGAGA AGAAACAGGA TGAAAAATCG CAGGATTATG CGTACAGAAT TGTAAAAAAT
AGTTTCGCTT CAAAGTTGCG GTACGCTATA GATTCTCAAT CGGGCAAAGG TACTAGTACT
GAGGAACCAG GTGGAGATGA ACCTGGCGGA GATGAACCTG GTGAAGGTGA AGGTGGCGAT
GAATCAGGTG GTGATACTGA TACTGGCTCG CGTAGTGCAA CGTTGAAATC GCGTGTAAAG
AAACTGCGAT CCGCAAGGAA ATCGCGATCT GTAAGAGATG GCGATGATGA AGATGAAAAT
CCTGAACCTG AGCCTGACGA AAAACAGGGT AATACTTATA AAATCATGTT TAAGAAGTCA
AGCGAAGGTG GTTGCACTTG GACAGAACTT GGCGATGGTG ATGGTGCTGT GCCTGTTAGC
GATCCAAAGT CGCCTTTAGT GTTCTTCACT GCAACGTACT ATTTGGAGAC TTTTGTTAAG
CCAGTGCCTT TGCCGCATAC TGGCGGTCAG TCGGCTGTTA TGTTCACGTT CTTGTCGATT
GGACTGTTCT CAATGTTCGC TGTTGCTGGG GCATTTGGTC GTCATGGATG GGTTGCGTCT
GTGCTTCCAA GCTCTGCTTT AGCTGGGTTT TCGAAGGCTT TTGGTGGCGG CGCGCTCGAT
ATTGCTTCTG GTGCTAAGCA CTGCTTCGCG CATCCTGTTG TAAGTGGCTC GATGATTAAA
TCTGCTGTAA GTGCGGCAAC CGGCTTCTTT GCTCGGTTCC GAAGTGACGA TTCCACCTTC
GGCAAGCACA ACAAACAGCG CTAA
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| Protein sequence | MMSSRKHRIL STIGAVSCVV SMILSVTVLP AIAYANVTKN PLFVAAMAAA AENNRGQNKS
GEGGSKKGVQ GEAGKGTGKE VKGDKAKGVD KKEGNRAAKG EAVKDNEVVD NKGSKGNGEN
PNGGGAVDNG SAGKDAGKDA GDAAGNAAKS GKDANNADNK SAKKDGKAGK DCSAGGVEKL
SLDAVKALPA CVASVMATNA DGTISTLSIE PPSGENKCAV SADQRSDEFG KIINEIKKLA
PTDSSFGFYG GKVYAYGRLS KLDGKNYVGL FSGKNISNID NIEKFDISYV TDMSHLFKDS
SLTDFSFLSS WDVSNVTNMQ SMFEGCTGLE DISGLANWKV DNVTNMEGMF EGCTSLKSLK
GLEDWDVSNV RSMSGMFASV IKDQDQHDAL NPVDGYAGEM AIDSVKPLRK WNVSNVMNMN
RMFEGCTSIT DFTGLEGWDT KSVVAMIGMF EYCKSMSSLG FLKKWTVKNV EYMMAMFALC
DKIKNTEGLE NWNVSNVKKM DDMFAECSSL DSISGLSNWN TSGKSSTSKL TSTYRMFDNC
SFLSDLQPLS GWNVGSVTDM HDMFNNCGSL TGLEPLSGWD VGSVKNMNSM FSSCNGLTSL
ESLSKWLNDK SSVTDMSSMF SGCNSLSDLK GLENWNVGNV KNMSSMFSGC ATDIYGSGDD
PNPIGIKGLA DISALSGWDV GSVTDMSSMF SGCNSLSDLK GLENWNVGSV KNMSSMFSHE
VSGSDFDKLT DISGLSKWNV SNVKDMSSMF NSCVTLESIN PLSGWNVSNV KDMSSMFAYC
KKLTGAADLS KWNISKVTNL SSMFSNAGAE SGDSLILDFS DKAFTKSDTP VYADDEGKQR
YFSVDSMFSG FKGTLIANNL KSSGFENNPE DDPIANFASG YIFSLDENGH SNNIVVTNNV
TILDTISNDD DLKKIAYYIP VKAKLMEPGD IKNDNMTCDC NRDSGGTTYT YYVPALYNSS
NLEKKQDEKS QDYAYRIVKN SFASKLRYAI DSQSGKGTST EEPGGDEPGG DEPGEGEGGD
ESGGDTDTGS RSATLKSRVK KLRSARKSRS VRDGDDEDEN PEPEPDEKQG NTYKIMFKKS
SEGGCTWTEL GDGDGAVPVS DPKSPLVFFT ATYYLETFVK PVPLPHTGGQ SAVMFTFLSI
GLFSMFAVAG AFGRHGWVAS VLPSSALAGF SKAFGGGALD IASGAKHCFA HPVVSGSMIK
SAVSAATGFF ARFRSDDSTF GKHNKQR
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