| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1060 |
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| Symbol | pdxT |
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| ID | 8709509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1207649 |
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| End bp | 1208242 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483152 |
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| Product | pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 |
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| Protein accession | YP_003374263 |
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| Protein GI | 283783509 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0311] Predicted glutamine amidotransferase involved in pyridoxine biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.149673 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGTCAAACT CACCTACCAA TACTGATAAC TCCGCTCATA CTGTAGCAGT TTTAGCTGTT
CAAGGTGCTT TTCTTGAACA TCGCTTAATG CTTGAAAAAT TAGGCGCACA CGTTATTGAA
CTTCGTCAAG CGCGCGACTT GGAGCAGTCT TTTGACCGCT TAGTACTTCC GGGCGGCGAA
AGCACTGTGC AAGCTAAGCT TCTTCGTGAG CAAAATATGC TCGAACCTTT GCGTGAGCGC
ATTGCAGGAG GAATGCCTGT TCTTGGCACT TGCGCAGGTT TGATTTTGCT TGCGAAAAAC
GTGGAAGGTG ACGAAGTAAA CGGTTTTGGC ACTTTAGACG TAACAGTTAA GCGCAATGCT
TACGGACGTC AGCTCGGAAG CTTCCATTGC GAGGCTGAGT TTGGTGAGCT AGGCAATGTG
CCGATGACGT TTATTCGCGC ACCTTACATT GCAGAAGTAG GCTCTAATGC CAAAGCTCTT
GCAACTGTAG AAGGTCATGT TGTCGCCGCG CGCCAAGGAA AGCAAATCGG CACATCCTTC
CACCCGGAGC TTGACAACGA TACGCGAATC CACCAGCTTT TCTTGGATTT GTAA
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| Protein sequence | MSNSPTNTDN SAHTVAVLAV QGAFLEHRLM LEKLGAHVIE LRQARDLEQS FDRLVLPGGE
STVQAKLLRE QNMLEPLRER IAGGMPVLGT CAGLILLAKN VEGDEVNGFG TLDVTVKRNA
YGRQLGSFHC EAEFGELGNV PMTFIRAPYI AEVGSNAKAL ATVEGHVVAA RQGKQIGTSF
HPELDNDTRI HQLFLDL
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