Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1055 |
Symbol | |
ID | 8709054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1200775 |
End bp | 1202457 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646483147 |
Product | putative phosphonate C-P lyase system protein PhnK |
Protein accession | YP_003374258 |
Protein GI | 283783504 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.573369 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTTAA ATATTCAAAA TCTCACGCTA AAACTTGGCG GAAAACTAAT TCTTGACAAC GTATCAATTG AGATTTCTGA CGGTGAGCGT GTTGGCTTAG TTGGTTCTTC TGGCTCTGGC AAATCTATGC TAATTCGAGC TATAACTGGA TTATTGCCGT CAAATGCTGA AATTTCAGGC TCTTGTATGC TTGGCAATCT TCAAACAGTG AAAGCAAAAG ATGAAAATTT AGCTTCTATT CGTGGAAAAT ACGTTGGTGT AGTATTTCAG CAAGCTAATA GAGCGCTTAA TCCAATGTTA AGCGTTGAAA AACAAATTTC TTTGCCTTTG CGAATACATT ACAATCTAGA TGATGACGAT ATTCACAATC GAGTATGCAT GATGCTTGAA AAAGTAGGGT TGTCGAAAAA TCTCGCATCT CAACGCACGT TTGAGCTTTC TGGAGGTCAA CAGCAGCGAG TTGGTATTGC TACAGCTTTG ATCACCTCTC CGCGTTTGAT TTTGGCTGAT GAGCCTACTA CTGCGCTTGA CTCGGTTACA CAAAGTGAAG TTGTGCGAAT GCTTGCTTCA CTTGTAGATG ATATGGGCGC TTCAATGCTT TTTGTAACGC ACGATTTTTC TGTGCTTTCG CATGCTGCTA ATCGTTGCTA TGTGCTCGAT TCTGGGCGTG TGGTCGATAG TGAAAATGTT AAGAATTTGC TTGATAATCC GCGTATTTCT TCTACTAAAC AATTAGTGAG TGCTGCTAAA AAGTTGACTT TTAGAGCGCA AAATTTGGGT TCTAAAAATT TAGATTCTGC AAAAGTGGGT TCTGCAAATA CTGGTTCTGC AAACGTTGAT TCTGAAAACG CTGATTTTAA GAAATTTAAT TCCCATATTG GCAACAGTGA AGAAAATTCG CTTATAAATG CAAAAAATAT TCACGTTACT TTAGGTCGAG CAAAAACTCG TGCTGAAGTG TTAAGCGGTG TAGATTTACA TCTTAATATT GGCGAATCTT TGGCGATTAT TGGCGGATCT GGTTCCGGCA AAACAACTCT TATACGCGCT ATGTTGGGGC TTGAAACTCT TTGCGAAGGT AACGTTACTT ATTGCGGTGA AATCGTAAAT AATGCAAATT TATTAGAAGT AAATAAAAAT GCTTGTACGC TTATGAGACG CGAATCGTCG CTTGTATTTC AGCATCCGTT TGCTGCATTG GATCCACACT GGACAGTTCA AAAAAGTGTT GCTGAGCCTC TTAGAATATG GCGAAAATCG CTTAAATTAG ACGATGCAAC TATTGAGCAG CGTGTTTGCG AAATGTTGAA ATTAGTAGGC TTAAAACCTG AAGATTTTTT GGAACGTCAC CCTCACGAGC TTTCTGGCGG TCAAGCGCAA TGTGTTTGTA TTGCTCGCGC CTTAATTAAT AATCCTCGAG TTTTGCTTGC TGACGAGCCT ATGAGTGCAA TTGACGTTGC TGAAAGAACT CGCATTTTAG ACGCTTTTGC GTCCATTCGC TCCGAGCGTA AAAGCATGTC ATGCATATTT GTAAGTCATG ATTTGGGTAT GATCCGGCAT TTAGCAACGC GAGTTATTGT TCTTAATGAA GGAAAAGTTG TGGAATGTGG CAGTGTAAAT GATGTGCTCA ATAATCCACA AAATGACTAC ACTCGTGCTC TTGTAAACGC AGCAATCATG TAA
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Protein sequence | MSLNIQNLTL KLGGKLILDN VSIEISDGER VGLVGSSGSG KSMLIRAITG LLPSNAEISG SCMLGNLQTV KAKDENLASI RGKYVGVVFQ QANRALNPML SVEKQISLPL RIHYNLDDDD IHNRVCMMLE KVGLSKNLAS QRTFELSGGQ QQRVGIATAL ITSPRLILAD EPTTALDSVT QSEVVRMLAS LVDDMGASML FVTHDFSVLS HAANRCYVLD SGRVVDSENV KNLLDNPRIS STKQLVSAAK KLTFRAQNLG SKNLDSAKVG SANTGSANVD SENADFKKFN SHIGNSEENS LINAKNIHVT LGRAKTRAEV LSGVDLHLNI GESLAIIGGS GSGKTTLIRA MLGLETLCEG NVTYCGEIVN NANLLEVNKN ACTLMRRESS LVFQHPFAAL DPHWTVQKSV AEPLRIWRKS LKLDDATIEQ RVCEMLKLVG LKPEDFLERH PHELSGGQAQ CVCIARALIN NPRVLLADEP MSAIDVAERT RILDAFASIR SERKSMSCIF VSHDLGMIRH LATRVIVLNE GKVVECGSVN DVLNNPQNDY TRALVNAAIM
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