| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1050 |
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| Symbol | dnaG |
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| ID | 8708989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1194609 |
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| End bp | 1196765 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646483142 |
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| Product | DNA primase |
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| Protein accession | YP_003374253 |
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| Protein GI | 283783499 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTAACGA ATCCACTAGG AGTTTCCAGC ACTGGCGAAG AAATTTACCA CTCGCCGCAG
ATTTGCGATA AGCTAGATAG CATGGTTGGA ATGATTGTGA AAGAAGACAT TGAGCGCGTG
CGCGCTGCGG CAGATTTGTA TGACATTGTG TCTGCAACAG TGACGCTTAA GCCTTCCGGA
ACTGGCACTT TTGTAGGTCT TTGCCCATTC CACGATGAAA AAACGCCAAG TTTTAGTGTG
CGACCAAGCT TGGGAGTATG GCACTGTTTC GGTTGCGGCG CTGGTGGTGA TGTATTTAAG
TACGTTGAGC AAAAAGAGAA TATTGATTTT CGTGAAGCGG TCGAGTTTTT AGCAGATCGT
TATCACATTG AGATGCATTA TAAGCAGGAG CAAAATAATG ATTCTCAAGC GCGCGGTTCT
AAGCGAGCCA GGCTTTTAGA AGCAAATGAA GAAGCGCAAA AGTTTTTCGT TTCAAATCTC
GGCACTAAAG AGGCAGCTCC TGCGCGCGAA TTACTTGCAG GGCGAAACTT TACTCCGCAA
CAAAGTGCGC GTTTTTCTTG TGGTTACGCG CCTAAAGGCT GGGATAATTT AGTTAGATAT
TTGGCAAATA AAGGTTTTAC GCGTCAAGAG CTTCTTGATG CTGGTCTCGC TAGACTCGGT
CAGCGCGGAA TATATGACTA TTTCCGCGGT CGCTTAACTT GGCCTATTCG TGACTCGACT
GGTCGAACTC TTGGCTTTGG TGCAAGAAAG CTTTATGACG ACGATTCTAT TAGCGCGAAA
TATATTAACA CTCCTGACAC TGTACTGTAT CGAAAAACGC AAGTTTTGTA CGGAATTGAC
TTAGCTAAAG CAAATATTGT AAAAAAGCGT CAAGTTGTAA TTGTCGAAGG TTACACGGAC
GTTATGGCAT GCCATTTAGC TGGTATTGAT ACTGCAGTTG CAACTTGTGG AACTGCGTTT
GGTGTTGAGC ATGCAAAAAT TGTGCGCCGC CTTATTGCAG ACGATTCTTT GGGTGCAATT
CAGCTTGTTG GCCCACTGAA GGTGGATGGA CAGTCTGTAA GTTCGCGCAT CGTTTTTACT
TTCGACGGCG ATGCTGCAGG TCAAAAGGCT GCACTACACG CTTTTGGTTT GGATTCTGCA
TTTTTGACTC AAACTTTTGT TGCTGTAGCA GACAATAATC TCGATCCTTG CGATTTGCGT
ATTCAGCGCG GTGATGAAGC TGTGCGTTCG CTTGTTGCAC ATGCAAGTCC GCTATACGAT
TTCGTTATTG ACACAGTAAT TAATCGTTTT GAAACTTCGT ACACTACTGG TCAAATGGGT
GCTATAAAGG CTGTCGCTCC TCTTATTGCG CAAATTCGAG ACCGTTCGCT GCTTGACTTG
TATATGCGCA AAGCAGTGCG CTCAATTGGC GTTGATTTAG CTGTTATGCG CAATGAGGTT
GAGTCTGCGC GTAGACGTTT GAAAGTGCGT GACGACGATG CTTATGCGCA AAAGTATAAC
GTTATTCCGC CTTTTGGTCA GCAAATTCAT GACGATCGTA ATGCAGGTTT TAAAGCTTCT
CGCATGGGAA TTATTAAAAG TTCTGCTAAA AATCAGCATT ATTATCGTGT GGATGATGCT
GTATTTATGT GCGAACAACA ATTTATGGCG TTACTTTTGC AAGTTCCGCT TGCTTTTGAT
GAAAAATTAT TTGCGCAATT GACTTTGAAT AATTTTATTA CGCCAGTATT TCGTACGCTG
TTTCAAGCAT TTGTAGCTGC AGGCGGATTG CCGGTTGGCA ATGTTTCGCA AGGATTGTGG
CTGCACATGA TGACAAAAGC TGCAGGTCCT TTGCTTGAGT CCGTTATTAC AGAACTTTCT
GTAATGCCGT TGCCGCTTCC TGCAGCTTCA GACTCGTTAG AAGATACCGG CAATCGACAG
AATCAGCAAG TTACAAACGG ATCTCCTTCA GATTTTTTGC GAAAAGCTAC GAGTGCAGAA
AGTAAGTATG CAAACGAGCT GCTTATTCGC CTTCTTGATA TCGGCTATAT GCGTAAAATC
GGTGCTGCTA GAGTGCGTAT GGCGAAACTC AAGGATGGTC AGGAAAAGCT TGAGCTTCTA
GGAAAAATTA CTTCAATGGA AGCTGCTCGC AAAAACTTGC AATCGCAAAT TCTATAA
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| Protein sequence | MLTNPLGVSS TGEEIYHSPQ ICDKLDSMVG MIVKEDIERV RAAADLYDIV SATVTLKPSG
TGTFVGLCPF HDEKTPSFSV RPSLGVWHCF GCGAGGDVFK YVEQKENIDF REAVEFLADR
YHIEMHYKQE QNNDSQARGS KRARLLEANE EAQKFFVSNL GTKEAAPARE LLAGRNFTPQ
QSARFSCGYA PKGWDNLVRY LANKGFTRQE LLDAGLARLG QRGIYDYFRG RLTWPIRDST
GRTLGFGARK LYDDDSISAK YINTPDTVLY RKTQVLYGID LAKANIVKKR QVVIVEGYTD
VMACHLAGID TAVATCGTAF GVEHAKIVRR LIADDSLGAI QLVGPLKVDG QSVSSRIVFT
FDGDAAGQKA ALHAFGLDSA FLTQTFVAVA DNNLDPCDLR IQRGDEAVRS LVAHASPLYD
FVIDTVINRF ETSYTTGQMG AIKAVAPLIA QIRDRSLLDL YMRKAVRSIG VDLAVMRNEV
ESARRRLKVR DDDAYAQKYN VIPPFGQQIH DDRNAGFKAS RMGIIKSSAK NQHYYRVDDA
VFMCEQQFMA LLLQVPLAFD EKLFAQLTLN NFITPVFRTL FQAFVAAGGL PVGNVSQGLW
LHMMTKAAGP LLESVITELS VMPLPLPAAS DSLEDTGNRQ NQQVTNGSPS DFLRKATSAE
SKYANELLIR LLDIGYMRKI GAARVRMAKL KDGQEKLELL GKITSMEAAR KNLQSQIL
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