Gene HMPREF0424_1045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1045 
Symbol 
ID8709584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1188198 
End bp1188809 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content33% 
IMG OID646483138 
Producthypothetical protein 
Protein accessionYP_003374249 
Protein GI283783495 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAGA TAATTAAATC ATTCAAGGAA GAATTTACTA CTGCTGCAGT TGTCACAATA 
CCATTATGTG TTGCTATTAA TTATATTTCT GGCACTATAG CTGGCGTACT AAAACTACCT 
ATTTTCCTTG ATACTATAGG CACTTTATTT GCATGCATGG TTTTTGGACC ACTTGTAGGA 
ATAATAACTG GAATGCTATC TTCAATAGTT TCATCAATCA CTATGCCAAC CATGCTTCCA 
TTTATAGTGG TCAATATTGC TCTGGCCTTA TGCGCTGGCA TTCTAGCAAA ACATAAAATG 
TTTTCAAATT ATATGAAAAT TTTTATTTCT TCAATAATCA TGGCAATAGT ATCCATTATT 
ATTGCGGCAC CGATAGTAGT AATAGTATTT AGCGGGTTTA CTGGCGGAGG ATCATCTATG 
ATAGCGGGTT TAATAACTGC ATCTGGAGTG AATATTTGGA TTTCTGTATT CTCTGCTGAA 
GGATTCTTTA CTTGGGCTGA TAGAATATTA ACAATCATTA TATGTTTAAG CGTTATAAAA 
TGCTTGCCCA ATAAATTACT GCTTCTTTTC CCATTAGGTT CACTTTACTT AAAAAATTCA 
GATTCTGAAT AG
 
Protein sequence
MKQIIKSFKE EFTTAAVVTI PLCVAINYIS GTIAGVLKLP IFLDTIGTLF ACMVFGPLVG 
IITGMLSSIV SSITMPTMLP FIVVNIALAL CAGILAKHKM FSNYMKIFIS SIIMAIVSII 
IAAPIVVIVF SGFTGGGSSM IAGLITASGV NIWISVFSAE GFFTWADRIL TIIICLSVIK 
CLPNKLLLLF PLGSLYLKNS DSE