| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1043 |
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| Symbol | |
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| ID | 8709355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1185089 |
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| End bp | 1186840 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483136 |
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| Product | acetolactate synthase |
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| Protein accession | YP_003374247 |
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| Protein GI | 283783493 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAA TACACAAAAC AGAAGATCAG AAGCTTGAAC AAAAACTTGC TCGTCAAAAG
CATCTTCGTG AAAACCACAA GCGCAATACT GCAGATTTAG TTGTTGAATG CTTGGTAAAC
GAAGGCGTTG AAGTAGTATT CGGTATTCCA GGTGAGGAAA ATATTCCGCT TCTTGAAGCA
ATTGAGCGTG ATGGGCGCAT TCGTTTTGTG CTTACTCGCC ACGAGCAGGG TGCTGGTTTT
ATGGCAGCAG CATACGCTCA TATTACTGGA AAACCGGGCG TATGCTTGGC AACTCTAGGT
CCTGGCGCAT TGAATTTAAC GCTTCCTGTA GCTCAAGCAA ACGCAAGCAC CACACCGCTT
GTAGCGATTT GCGCACAAGG TAACGTTTCT AGGCTTTATA AGGAATCTCA CCAAATTATT
GATTTGGTTG CGCTCTTCCA ACCGATTACG CAATGGTCTT CTATGATGCT TGCTCCAGAA
TCTGCGCCGG AAATGGTTCG AAAAGCTTTC TCTATTGCCG GTCGCAACCG TCCGGGAGCC
ACGTGCCTTG TTATTCCGGA AGATATTAGC GAAATGCCAG CACCTGACGA CGCAAAGCCT
CTTCCACTGC CGCATCCTTT GCATATTATG CCAGCGCCAG ACACTATTGA AGAAGCTGCG
AAAATTATTA GTCAAGCAAA GCAACCTATT ATTTTGGCTG GAAACGGCGT TGCGCGCTCT
CACGCTGAGG ATCAGCTTCT TGCGTTTGCT GAGCAGCTTA ATGTTCCAGT TGCAACTACT
TTCGAAGGAA AGGGCGTTTT CCCAGATAAT CATCCGAATG CACTTGGTGT AGTTGGCTTC
ATGCATCGCG ATTACGAGAA CTTCGCGTTT GACACTGCTG ATTTGATTAT TGCTGTCGGC
TTCTCAATTC AGCAGTTCGA CCCGAAGAAA ATCAACCCAA ATATTGATAA AACTATTATT
CACATCAATA CTTTTGTGGA AGATACCGAT GCGCACTACC CTACTGCGCT GAATATTATG
GCGAATATTG GCCAAACGCT TAAAACTCTT ACAGAAGTAT TAAAGACACG CAACATTACT
TTCGACGTAA GCCACCCACG TATTCGACAA CTGCTTACGG AAGAATTACA TTCTTGCGAA
AACGACGAAA GCATGCCAAT GAAACCGCAG CGCGTAGTTT ACGATATTCG CCGCGCTGTT
CCTGAAGGCA CGAAGGTACT TGTAGATACA GGTGCTTTGA AAATGTGGAT GGCACGCTTG
TACCCAACTA TGCACCCGAA TACTTGCATA ATCGACAACA GTCTTTCAAC TATGGCTTGG
ACGCTTCCGG GAGCTGTTGG AGCTTCGTTT ATTCGCGATA ATTCCGGCAA AATTAACACG
AAACCGGTTT TGGCTGTGAT GGGCGACGGA AGCTTTATGA TGAACGTGCA GGAAATCGAA
ACTGCAGTGC GCGTTGGCAG CCGAATGGTA GTTCTTGTTT GGGAAGATAA CGCTTATGGC
TTAATTAAGT GGAAGATGGA ACTTCATGCA GGCGAGCACG AATACGTTGA TTTCCATAAT
CCGGATGTGC CAAAACTAGC TGAAAGCTTT GGCGCGCGCG GTCATGCTGT TAAAAAGCCG
GAGGATTTGT ACAACATGCT GCGTGAAGCG CTGGATCAGG AAAGCGGTGT CGATGTGATT
TCCTGCCCAG TTGATTACAG CGAGAATATG AAGCTTATTG AAAAACTCGG CGATATTGAC
TTTAGTAACT AA
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| Protein sequence | MAEIHKTEDQ KLEQKLARQK HLRENHKRNT ADLVVECLVN EGVEVVFGIP GEENIPLLEA
IERDGRIRFV LTRHEQGAGF MAAAYAHITG KPGVCLATLG PGALNLTLPV AQANASTTPL
VAICAQGNVS RLYKESHQII DLVALFQPIT QWSSMMLAPE SAPEMVRKAF SIAGRNRPGA
TCLVIPEDIS EMPAPDDAKP LPLPHPLHIM PAPDTIEEAA KIISQAKQPI ILAGNGVARS
HAEDQLLAFA EQLNVPVATT FEGKGVFPDN HPNALGVVGF MHRDYENFAF DTADLIIAVG
FSIQQFDPKK INPNIDKTII HINTFVEDTD AHYPTALNIM ANIGQTLKTL TEVLKTRNIT
FDVSHPRIRQ LLTEELHSCE NDESMPMKPQ RVVYDIRRAV PEGTKVLVDT GALKMWMARL
YPTMHPNTCI IDNSLSTMAW TLPGAVGASF IRDNSGKINT KPVLAVMGDG SFMMNVQEIE
TAVRVGSRMV VLVWEDNAYG LIKWKMELHA GEHEYVDFHN PDVPKLAESF GARGHAVKKP
EDLYNMLREA LDQESGVDVI SCPVDYSENM KLIEKLGDID FSN
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