| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1037 |
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| Symbol | |
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| ID | 8709803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1178645 |
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| End bp | 1181203 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646483130 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374242 |
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| Protein GI | 283783488 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2898] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACATA AAGTTTTTGC ATTAACGCTT ACATGCATTT TTATTGTTAT AAATTGCATA
CACTGGCTCG TATTAGCACT TATGCATTTT TATACTTATG GCACAAGCGC TACTCTTGCA
CAATTGTTTA TGCGACATCA TCATTCAAAA GGTCCAAGCC TATTCTTCGG GCACGGAAAC
GTCACAGAGC TGCTGATAAA AGTGTGCCAT TCGCTTATTT TCGTAAATAA TATGCCATCT
CTTATGGTTA ATTGTTTACT TGTTGCCGTA CTTATTGGCG TTGCAGAAAC TCGTATAAGT
AGACTTAATA TTATTTATAT TGCAATATTT AGCACACTTG TTGGCATAAT TGTAGGATTA
ACAATCATAG GTAATCTTTC AATCATTATT CGAAACATGC ATTGGATTAC CAAGATTCCT
ATTCGACTAT CTCCATTCAC ACTGTTTATT GGCGCTTTTA TGGCTTCTGC ATCTTACGAA
TCTATTTTGT GGCGCAGAAG AACTTTAGTA ATTGGATACG CTACTACTTC AGCAATGCTT
CTTTATAGTG GAAATCCAGG CGATTATTGC ACTATTATTG CAGCCCTTAC AGGACACATC
ATCGGCAATA TTATGAGCAA AACAAAAGGC GTTAGACGAA GTGTAAACTG GTGGGAAGGT
ACAGATTACG AAATTCGTAG GCTTTTTGCA GTAGCTCAGA GCATTATTGC ATTAGGTCCA
GTGTTGGCAT TATCTTCACG CTCTCACGCA GGAATTCTTA CTACTCTTGG TTTGTTTATG
TCACCGCAAC TAGGCTCTAA GACATGGCTT ACGCGATGCA TGACAAATTA CAGCACAAAT
AATTGTTTTC TTCATTCAGG TCTACATCAC GCTGCAATTG GCGAATTATG GATTCGCATT
CTATTACCAA GCATCACACT GATGATTATT GCGTGGGGAA TGTTACGAGG GCGTAGACTA
GCTGCATTAA CTTCTATATT TATAAACGCA CTGACTGTGC TATATGCAGG AATGTATTTC
ACTGTTTTGC CTTTAATTGC CACAAAACAA AATATTTTGG AACATCAACA TAATGCTGTT
GCTGTTGCTT TTATGCTTAC CGCTCTCCCA CCATTATTGC TTACTATTTT GTTGATAATT
AATTTAAAGC ATTTTTCTGT TCATACGAGC AAACTACAGG CACGTTTGGG ACTAATAGCA
ATTTTTATAG CATTGTATAT AACTGGTGCT GGATATGTTG CTTTTGGTCT TATGATACCT
GAAGAATTTA CTCCATCTGC TGATATTTAC CACTTATTGC GAGATCTACC AGGGCGCTGG
ATGCCTATGG GATTTGGAAA CAGATCTAAC GCAATGCTTC GCACTGAAAC ACCCCTATCT
TCTTTACTAG CACAAAGCGT GGGCGTGATA TTCTGGACAA TATTGTTTAT TGTCTGCTTT
ACGTGGTTCC GCAGCAGCAT CTCTACAAGC GAAAACGATA GAAAAAAAGC AAGCTCATTA
GTAGAACTTG GTGGAAACAC AATGAGCTTT ATGACGACTT GGGCGAATAA CCATTATTGG
TTCTCTCAAA GCGGGCAATC TGCAATTGCC TATAGACTAA ATTACGGTAT TGCGCTCACT
CTTACAGAAC CTTTTGGAAA TGAAAAAGAG TATTCACAAG ATATTCGAGG ATTTATTAAA
TTCTGCGAAC AAAATTCGTG GTCTCCAGCA TTCTATGCTG TGCACGATAA AACGCGTCAA
GAACTAGAAA AACTTGGATT TACTTCTATT AAAGTCGGAA CAGACATGCT AGTAGACCCT
AATACTTGGC AGACGCGAGG GAAAAAATGG CAAGATATTC GTACAGCTAT AAACAAAGCA
AAACGAGATG GAATTGCCGA CGTACTTACA ACTTATAACG AAGCCTCTTG GGACGTACGG
CAACAAATTG TAGAAATTTC AGAAGAATGG GCAGAGTTAA AAGCTCTTCC AGAAATGAAA
TTTACTCTCG GAGGACTTGA CGAACTTCAA GATAGCCGCG TCAAAATTTT ATACGCTATT
AATGAAGACG GCAGGGTACT TGGAGTAACA AGCTGGATGC CAACGTATAG AAATAATCGA
ATTATTGGTT GGACACTTGA TTTTATGCGT CACCGCACAG ATAGTCCTAA TGGGATTATG
GAATTATTAA TTGCTAGAAT GGCAGAACGT TTAAGAGATG AAGGATTAGA AAACCCAGAC
TGTTCTGTAG AATTTATGAG CCTTTCTGCA GCACCTCTAG CTGGCATAAA CGAAGACATA
TTGAACGAAA ATGGTCAAAA ATCTTCTAAC GTTATTAATC ATGCGCTAGA AATGATGTCT
GACATTTTGG AACCAGCTTA TGGGTTCAAA TCGCTATATT TCTTCAAGAA AAAATTCCAG
CCATCCGCAA GTTCCGTATA TGTTTGCTAT ATGGATTCTG CAAAATTAGC TCAGATTTCA
CTAGCTGTAA CTCACGCCTA TTTACCGGAA GCTAATCCTA AACAAATACT AGAAATGGTA
AAATCGTTGC GACCAAAAAG CAATGAAGCG AACAAATAA
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| Protein sequence | MQHKVFALTL TCIFIVINCI HWLVLALMHF YTYGTSATLA QLFMRHHHSK GPSLFFGHGN
VTELLIKVCH SLIFVNNMPS LMVNCLLVAV LIGVAETRIS RLNIIYIAIF STLVGIIVGL
TIIGNLSIII RNMHWITKIP IRLSPFTLFI GAFMASASYE SILWRRRTLV IGYATTSAML
LYSGNPGDYC TIIAALTGHI IGNIMSKTKG VRRSVNWWEG TDYEIRRLFA VAQSIIALGP
VLALSSRSHA GILTTLGLFM SPQLGSKTWL TRCMTNYSTN NCFLHSGLHH AAIGELWIRI
LLPSITLMII AWGMLRGRRL AALTSIFINA LTVLYAGMYF TVLPLIATKQ NILEHQHNAV
AVAFMLTALP PLLLTILLII NLKHFSVHTS KLQARLGLIA IFIALYITGA GYVAFGLMIP
EEFTPSADIY HLLRDLPGRW MPMGFGNRSN AMLRTETPLS SLLAQSVGVI FWTILFIVCF
TWFRSSISTS ENDRKKASSL VELGGNTMSF MTTWANNHYW FSQSGQSAIA YRLNYGIALT
LTEPFGNEKE YSQDIRGFIK FCEQNSWSPA FYAVHDKTRQ ELEKLGFTSI KVGTDMLVDP
NTWQTRGKKW QDIRTAINKA KRDGIADVLT TYNEASWDVR QQIVEISEEW AELKALPEMK
FTLGGLDELQ DSRVKILYAI NEDGRVLGVT SWMPTYRNNR IIGWTLDFMR HRTDSPNGIM
ELLIARMAER LRDEGLENPD CSVEFMSLSA APLAGINEDI LNENGQKSSN VINHALEMMS
DILEPAYGFK SLYFFKKKFQ PSASSVYVCY MDSAKLAQIS LAVTHAYLPE ANPKQILEMV
KSLRPKSNEA NK
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