| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1027 |
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| Symbol | |
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| ID | 8709460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1160098 |
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| End bp | 1163808 |
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| Gene Length | 3711 bp |
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| Protein Length | 1236 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483120 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374233 |
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| Protein GI | 283783479 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGTC ATCATGCGCT TGATGATGTT AGCGGTTCTG TAACTTTACA AAAATCTAAA
GGTTGCACTA AAGGGTGCTC TGTTGCTAAC GCTTCTAAAT TGTATTACAT TCGTCGCGCG
GCTCTTGCGC TGATTGTTGC CGTGGTGACC ATTCTTGCTG TTCTTGTTGT GCCTGTTAAG
CCTGCAAGTG CTGCTCAGGT TATGTGGTCG TATGGTGGAT ATGGGTATTT TACTGCTAAT
GGTAATGGTA TTGGTAATGC TGTTGAAAAT ATGGACATTA AGCCAAGTAT TACTAAGGAT
TCTAATGGTA CTCATGTGAA GTATAGAATA TATTTTAACT ATGCTTTTCT TGAGCGTTTA
AATCCTCAGC CTAGACAGCG TATTCCAGCA CGAGTCACGT TTTACGTAGA TCTTCCGAAA
CAGCTTATTA CAGACACTAT TAGAGTGAAA AGAGATAGGC GAAATGTTTA CGAGAAAAAG
TGGAATGACT GGTCAAGCCA GAATGATAAT GACACCCCAG AAACAATGAA AACTTGGGAT
AAATATTGGG GGTATACTCG GACAATTTCT CGTTGGCATT ATACGTATGG CAATACAGAT
TTCAATGATC AATGGGAAGA TACTGTTGGT GATGGTCATT TTGGCTGTGG GTATAATGTT
GATTCTGAGT CTAAATTTAA GAATTACAGT TTATGCGAGA TAAAGAAGTG GCATGACAAT
GGCGACTTTG GTATAATGCT GCGTTCGTTT GAGAGTGCTA ATTCTACGAC TTGCTACCGT
TGGGTTATTA CTGCAGATGT GCCAGATGGT ACTGATATTC GTTACATGCC TATTATTGCT
GGATATCAGG CTACGAATGC TGAATCTCAT GAGCGTGATT ATGCAGCTTA TGGTCCTTAT
GATCATGATG GTGATGGCAT ACCAGATAAC GTGGAGTGGG ATAATAGTAC CGATCCGACT
AAGCCTGGTG GATTGCATTT TGAAGAGTCG GAGGATTCAC GGCCTCGTCA AGCTTCTTCT
GTAAGAGCTT ATACTGATGA TGGTCACTTG CAAGAGGATT ACTTCAATAA TAAGGGTAGT
TTTGTTTCTG ATTATGGCAG TGACGGTAAA AGAGGTAAAC TGTACAATCA TATTCCTAAG
AATCTTACTT ATTCTATTGA TGGTAATGCT TATTTTGATA ACAATAAGAG TTCCAATGCT
CAAGTTACTT TTGATAATCC TAATAATCCG AAGCCAGAGA CTTTGCAACA AGGTCATGCG
TGGATTGACA AGTCCACAGG TAAAGTGTAT TTTAACCCAG CAGACTCGCA TAAGAATCAT
ACAGTTTATA TACCGATTAA GGTAACTTAT CCTAATCCAA GTAACTACAA CTGTAATCAT
CCTCAGCCTT TTTCAGAGAC GGTTGTCGCT AAATTCAAAG TTTGGCCTAT GTCTCATTTT
TATAAGCCTG TGTATCCAGA TTATGATAAA AAACAGGTAC AAGCTGGAAA ATCAATTACA
TCGGTTCCAA AAAACGAGGG GATTACTAAA GGCGATTTTC CGAAAGGTAC TAGGTTTGAG
CTTGGTAAGA GTAATAAATA TTCTAAACCA GTGCTTTCTT GGTCAAAAAT GACTAATACT
AGTACTGGTG AAGTAACTTT TACTCCGAGC AAACCTCAAG ATCCTAATAA TTACGATACT
CCTGTAATTG CTCACTATCC TGATGGCTCA AGTAGTACGG ATAATGGGCA GGTTTATGCT
CACGTTAAAG TAACGCCACT TACTGTAGGC AATAAGGATT TAGGTTTTTC TATTGCTGAG
GGTGCAGGTA TGCACGATTA CGGTAGTAAC TATTCCGACC GTATTACTTA TGGTTCGTAT
CATATGGATC ATTACACGAA TCTTGATAAA GATAAGCAGA TAGATAGTAG TAAGCTTCTT
ATACCTGACG CGTGGTCTGC TAACAATAAG TCTCCGATTA CATTCCGTGC TATTTGCCAC
GAAGAAAATA AGGATAATTA TACGCTTCTT AAATGGGATG AAGCGAAAAA CAGGTCTGTC
GGTGAGGTTA ACGGATTAAA GTTTACAGCT TTTCATCAAT GGAAAATCGC TACGGAAGAC
GAAGAAAACA AGTGCAGGAA TAATAAAAAC TGTAATCTTA ATGATTTTAA GTACTCGTAT
TTAACTAAAG ATGAGTACAA CACGAATACT ATGGCTCGTT CTCGCGCGAT TATTACTGGA
ACGCCTAGGA AAAGCGGTAA GTACGAGTGT CGCGTGTTTG CTTTTAACAA TGCTGTTAGT
CTTAAGAATT TCGATGACAT AATTGTCAAT GACAATGGTG GAAGTGTTGT TTATAAGAAA
ATGCTATTTG CCAATTATGG TACTAAGGGT GAGACTAAGG ATTCAAAGGG TAAAGATTGG
AATGATCAAA CCTTAAAGTT TAGTGTTAAA GCTTCTTACG CGCATAGGAA TAATCCTAGT
TACGTGCCGT TGAAAGTGAA GGCTGGTGAA TATCATGCAA GCCTTACTAA CGGTTATAAG
AATATAACTG ATGTGCCTAC GAGTAAGAAA GGCGCTAATA ATGCCACTAA TCAGGATGAT
ATAGAAGAAG GCGCGCTTCC AGACGGCACT TGGTTCGAGT TTGATGAAAA GCAGTATCAG
AAAGATAATC CTGGTTGGTA TAAGAAGGAT AAGGATCATC CTTATGGAAT GTCTTTCTAC
GATAATGGTC AAGATAATAA GCCTAGCGAT GGTGGGAAGA CTGGTAAAAA CCATGGTACG
GGTGATGGTT CTCACTATGG AGTGATGTCT TTTAAGCCGC TTAAGTGGCA GAAGCCTGGC
GTGTATAAAA TTCCTGTGAT CGTACATTAT CCGGACGGTT CAAAATCTAC GGATAAAGAT
GCTGGTAATG GGGATGGCAT AAGTAAACCA AATCCAGTGT ACGCGCAAGT GACAGTGGAT
CCTATGGAAG GCGATGATAT AAAGCTTCGA GTGCTAAGGT CAGATTCTCC TGACGCGCCT
GATATTAGTG ATACTGATGG TCAGTTTGGA AGTGGTAGCG GTCTTACCAT TATGAGTGGC
ATGAGTCTTA TGCATAGACC GTTTATTGAT GCTTGGTCTA CAAAAGACGT GTGGAATAGT
GGTAATAAAA CTGAGAAGAA AATAGGCTTG GAAGTTTTAT GCGAAAATGA TGACCGTGAT
TTTGTTTCAA AACTTGCGGG TATGAAAGCA AGTAATCCAA TTACATGGAG TCATATTGAT
ACGTACTCCG AGCGTGAGAA ATGTAAGAAT AATTCTAATT GCAACGCGCA GCATAAATTG
TATAGCTATA ACGCTAAGGA TAATCCGAAT AATCCGTTCG ATGCTGCTCA ACGTACTACT
GCTACGCTCG ATGGTATTCC AGAAAAAACT GGTGACTATC AGTGCGTTGC TTGGGCTTTG
AAACCAGAAG CTAAGAAATC TTTTGATGGC ATGAGTAATC ATCATGGTGC TAAATATGAT
TTGTTGAATG AAGTTTACGG TGATCAGTAC ACCAGGGGTA AAGATTACGA GTTTAAGACT
TTCATGATTC ACGTTGTGAA ACCATTCGCG CTGCCAAAGA CCGGCGGATG CGGCTGGAAT
GCGTCTTTGT GCGTTGTTTC TGCGATGTTG TCTAGTTTGA TTGCTGCTGT GTTTGTAATG
GATCAAACTA AGCGCGGTCA CGAGTTGCTT GGAAGGTGGC GACTCGTATG A
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| Protein sequence | MNRHHALDDV SGSVTLQKSK GCTKGCSVAN ASKLYYIRRA ALALIVAVVT ILAVLVVPVK
PASAAQVMWS YGGYGYFTAN GNGIGNAVEN MDIKPSITKD SNGTHVKYRI YFNYAFLERL
NPQPRQRIPA RVTFYVDLPK QLITDTIRVK RDRRNVYEKK WNDWSSQNDN DTPETMKTWD
KYWGYTRTIS RWHYTYGNTD FNDQWEDTVG DGHFGCGYNV DSESKFKNYS LCEIKKWHDN
GDFGIMLRSF ESANSTTCYR WVITADVPDG TDIRYMPIIA GYQATNAESH ERDYAAYGPY
DHDGDGIPDN VEWDNSTDPT KPGGLHFEES EDSRPRQASS VRAYTDDGHL QEDYFNNKGS
FVSDYGSDGK RGKLYNHIPK NLTYSIDGNA YFDNNKSSNA QVTFDNPNNP KPETLQQGHA
WIDKSTGKVY FNPADSHKNH TVYIPIKVTY PNPSNYNCNH PQPFSETVVA KFKVWPMSHF
YKPVYPDYDK KQVQAGKSIT SVPKNEGITK GDFPKGTRFE LGKSNKYSKP VLSWSKMTNT
STGEVTFTPS KPQDPNNYDT PVIAHYPDGS SSTDNGQVYA HVKVTPLTVG NKDLGFSIAE
GAGMHDYGSN YSDRITYGSY HMDHYTNLDK DKQIDSSKLL IPDAWSANNK SPITFRAICH
EENKDNYTLL KWDEAKNRSV GEVNGLKFTA FHQWKIATED EENKCRNNKN CNLNDFKYSY
LTKDEYNTNT MARSRAIITG TPRKSGKYEC RVFAFNNAVS LKNFDDIIVN DNGGSVVYKK
MLFANYGTKG ETKDSKGKDW NDQTLKFSVK ASYAHRNNPS YVPLKVKAGE YHASLTNGYK
NITDVPTSKK GANNATNQDD IEEGALPDGT WFEFDEKQYQ KDNPGWYKKD KDHPYGMSFY
DNGQDNKPSD GGKTGKNHGT GDGSHYGVMS FKPLKWQKPG VYKIPVIVHY PDGSKSTDKD
AGNGDGISKP NPVYAQVTVD PMEGDDIKLR VLRSDSPDAP DISDTDGQFG SGSGLTIMSG
MSLMHRPFID AWSTKDVWNS GNKTEKKIGL EVLCENDDRD FVSKLAGMKA SNPITWSHID
TYSEREKCKN NSNCNAQHKL YSYNAKDNPN NPFDAAQRTT ATLDGIPEKT GDYQCVAWAL
KPEAKKSFDG MSNHHGAKYD LLNEVYGDQY TRGKDYEFKT FMIHVVKPFA LPKTGGCGWN
ASLCVVSAML SSLIAAVFVM DQTKRGHELL GRWRLV
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