| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1026 |
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| Symbol | |
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| ID | 8709053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1158170 |
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| End bp | 1159864 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483119 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003374232 |
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| Protein GI | 283783478 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAT TCACTAAACA ATGCGTGGCG GCATTCGCCT CGCTCGCAAT GGCTGGCACG
CTGTGCGTTG CCGGTGCTGT GGTGGCAAAC AACGTAGCAT TTGCTACTGG TACGACTCAA
ACAGCTACTG ATGCTGATGC ACCTTGGAAT GCTGCCAATA AAGATAGAAA GGGTTCCATC
AAGATTACAA AGTACAAGGA TGAAACCGAT GAGAAAGGTA ATCAGAAGAA GGCAACTCCT
GTTAAGGGTG CAAAGTTTAA GGTAACTCCA GTTGTCAAAC TAGATGGTAC AGCTATTGAT
CTTAAGAAGT ATGATGATTG GCTAAAAGTT GCTGCTAAGG TTACAACTCT TAATACAGAT
CCTGGCTCTT TGCCATCAAC TGATTTAGGC ACTGCAATAT CAGACAACTC AAATACAGGC
AATGATAAGA CTCTGTTTAC AACAGGCTCT GATGGTAAAG TAACTGTTAG CAATCTTCAA
ATCGGCTTAT ACAAGGTTGA AGAAATAAGT GTTCCAGATG GATACGAAAA GCTTCCGCAG
CCATTCTTTA TGACTATTCC ACAAATCACC AGTGGTAAAA AAGGCACAGA ATATGATTAC
AATCCAACTG TCGATCCTAA GAATGCATAT ACTAAGGATG CTATTAAGAA GACTGTTGAC
ACTACAGGAA TGGTTGGTAC AAAGGATGAT TTGCCATATA CCATTTCAAC TTCTGTAGTT
ACAACTAGTG GTACGCCTGT TAAAGATCGT AAGGCTGATG ATTATCAGGG CTTTGCTGTG
TGGGATGACG CGTTGAAGTC TGCTTATGCT TCTAGTAAAG ATGTAGTTAA AAGCGTTAAG
ATTGGGAATA CTCCTATTAC TAACAGCAAT GGTCAAGAAG ATAAGTATAA GGTTACTATT
GAAGATAGTC CTATCGATAA TAATACTCGT AAGCGTATTA CCGTATCGTT TACAGATGCA
GGTCTTGGCG AAATTGCTAC TGCTCTTAAG ACTTCGCCAA ATGCAAAGTT AACTGTTGCG
CTTAAGTTCA CTCTTAAGGC AGATGCTCCA GCTGGCGAAC TTATAAACAA GTATGGTTAT
CAGCCAGGAT ATAAGAAAGG TACTCCTGAC CAGGATAAGC CAAAGCCTGT TAATCCAACT
CCAAATCCAG ATTCTAAGGT AACTCTTGTC AAATTCCAGA TCAAGAAGAT AAGCAGCACT
GACGGAAAAG CTATTAAGGG CGCTAAGTTT GCTGTGTTTG CAAAGCCAGA TGATGCAAAC
GCATGCGCGG CTGACGCTTC TCGTACTGAT GCTAAGTGCA AGAACAAGTC TTCTAAGGGC
TTTGCTACTG ATGCTGAAAC TGCTGATAAG ACTGGTTTGA CAGCAGATGG ATTTAAAGCA
AAAGTTGGAC AAAAGTTCTA CGTTGTGGAA ACTAAAGCTC CAGACAACTA TGTTTTGGCT
CCAAAAGTTG AAGAAGTTAC TATTCCTACG ACTTACTTAA CAGACGCTAA TTATAATAAA
GATTCGAAGA CGTTTGTTTA CTCGTTCAAG GATGTTCCAA CGAGCAATAA TAGCATTGAT
CACTGGTTCA AGCTTCCAAA GACCGGTGCT TATGGCGTGT TTATTTTCGC TATCGCTGGC
ATTGTTTTGA TTGCTGCAAG CGTGTTTATT TACACTCGTA ACAATCGCAA AGAAGAAGAT
AAGCAGCGCG CTTAG
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| Protein sequence | MNKFTKQCVA AFASLAMAGT LCVAGAVVAN NVAFATGTTQ TATDADAPWN AANKDRKGSI
KITKYKDETD EKGNQKKATP VKGAKFKVTP VVKLDGTAID LKKYDDWLKV AAKVTTLNTD
PGSLPSTDLG TAISDNSNTG NDKTLFTTGS DGKVTVSNLQ IGLYKVEEIS VPDGYEKLPQ
PFFMTIPQIT SGKKGTEYDY NPTVDPKNAY TKDAIKKTVD TTGMVGTKDD LPYTISTSVV
TTSGTPVKDR KADDYQGFAV WDDALKSAYA SSKDVVKSVK IGNTPITNSN GQEDKYKVTI
EDSPIDNNTR KRITVSFTDA GLGEIATALK TSPNAKLTVA LKFTLKADAP AGELINKYGY
QPGYKKGTPD QDKPKPVNPT PNPDSKVTLV KFQIKKISST DGKAIKGAKF AVFAKPDDAN
ACAADASRTD AKCKNKSSKG FATDAETADK TGLTADGFKA KVGQKFYVVE TKAPDNYVLA
PKVEEVTIPT TYLTDANYNK DSKTFVYSFK DVPTSNNSID HWFKLPKTGA YGVFIFAIAG
IVLIAASVFI YTRNNRKEED KQRA
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