| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1025 |
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| Symbol | |
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| ID | 8709996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1157067 |
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| End bp | 1158080 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483118 |
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| Product | sortase family protein |
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| Protein accession | YP_003374231 |
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| Protein GI | 283783477 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGA CTAAATTTGC AAAAGCTTGC CGCGATAGCT TAGAGAGGCT AGTTCGATTC
GCAGGCTTAC ATATTCTTAA ATCCACTCCC AATGAATCGT CTGCAAACGA ATCTTCTGCA
GACTCAGATT CTGCAAATCC CAAAAAATCT GTTTTTAAAT GCGTTATTGA ACCAATCATT
CTGGCGCTAG CTGCAATTCT ATGCTTCACC TACCCAGTGG CATCAACACT GTGGAATAAT
CACGTGTCTA AACAAATTTC CATAGATTAC GACAAAGTAA CTTATAATCA AGCCGCTAGC
GTGCGACAAT CTATTCTAAA AAGTGCGCGA AAATACAATG CGCGCAGAAA AAAAATTTTT
ACAGCCGATC CGTATGACGG TAGTGACAAT TACAAAAAAA CAGCAGACTA TAAGTCATAT
ATCAAACAAC TAGACGAACC AATGGGAATT ATGGGAATCA TAAAAATCCC AAAAATAGGC
GTAAAACTAC CGATTTATCA TGGTGCTTCG CGCGATGTTC TAGCTCGCGG AGCAGGGCAC
TTGTATGGCA CAGATTTGCC AGTGGGCGGC AAAAACAGGC ATACTGTTAT CACAGCTCAT
ACTGGTTTGC CTACAGCAAC CATGTTTGAC GGTTTAATCG ATATGAAGCG TGGAGACTAC
TTCTACATTG ATGTACAGGG CTATACAATG CGCTATAAGG TGTTTCGCAT TAGCGTGGTT
GATCCGCATG ATATTAGTTT GTTGCAGCGT GAAAAGGGTC GCGATTTAGC GACGTTGCTT
ACATGTACGC CGTATGGTGT TAACTCGCAT AGATTGCTAG TGACGGGGTA TCGCGTGCTG
CCGGACCCAG CGCATGCTCC AGAAGATCAT CTTCAGTGGC CATTCTGGAT GACTATGTTC
CTTATAGCAT TGATAAGTTG CGCGGTGGTT CTTGCCACAA TGATTATTGC TATAGTTCGA
AAACGTCGTA ATAATAATAT TGCGCCGCAA GGAATGCATA TTTGTGAAAA ATAA
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| Protein sequence | MSLTKFAKAC RDSLERLVRF AGLHILKSTP NESSANESSA DSDSANPKKS VFKCVIEPII
LALAAILCFT YPVASTLWNN HVSKQISIDY DKVTYNQAAS VRQSILKSAR KYNARRKKIF
TADPYDGSDN YKKTADYKSY IKQLDEPMGI MGIIKIPKIG VKLPIYHGAS RDVLARGAGH
LYGTDLPVGG KNRHTVITAH TGLPTATMFD GLIDMKRGDY FYIDVQGYTM RYKVFRISVV
DPHDISLLQR EKGRDLATLL TCTPYGVNSH RLLVTGYRVL PDPAHAPEDH LQWPFWMTMF
LIALISCAVV LATMIIAIVR KRRNNNIAPQ GMHICEK
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