| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1010 |
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| Symbol | |
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| ID | 8709556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1141366 |
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| End bp | 1141875 |
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| Gene Length | 510 bp |
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| Protein Length | 169 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646483103 |
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| Product | LytTr DNA-binding domain protein |
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| Protein accession | YP_003374217 |
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| Protein GI | 283783463 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTAA CTATTGCTAT CGTTCCGCCT GAGGAAGAGC AGTCAGTTCA GTTGTCAATT
CACAATATTG ACGATGAGCT TAAGCACATT ATCGCTCAGT TACAAAGCAT TGACTCCAAT
GATGCAAATG TAAGAAGTGC TGAAAATAAT ACTGAAATTA ATACTTCAGA TAAGTTGAGC
AACAATAATC CATTCATATA CGGTTATATT AACGATTCGA TTATTGTTAT GCATGAGCCA
GATGTGATTA TGATTTGCGT TGAAAATTCG CGCGTAATCA TTCACGGTGA TAAAGGCGAG
TGCGTGTCTT ACAAGCGCCT AATGGATTTT GACAATCCGC AATTCGCGTC GTTTGTGCGC
ATATCTAAAT CCGCAATCGT GAACTTGAAT CGCATTGTTC GAGTTGATCC AGGATTTGGT
GGAAGTATGA GCGTAAAAAT GGACGATGGA AGCGTTGAGT GGATTAGTCG CAGATGCTTA
GGTGGGTTCA AAAAGCGCTT AGGGATGTAG
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| Protein sequence | MKVTIAIVPP EEEQSVQLSI HNIDDELKHI IAQLQSIDSN DANVRSAENN TEINTSDKLS
NNNPFIYGYI NDSIIVMHEP DVIMICVENS RVIIHGDKGE CVSYKRLMDF DNPQFASFVR
ISKSAIVNLN RIVRVDPGFG GSMSVKMDDG SVEWISRRCL GGFKKRLGM
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