Gene HMPREF0424_0983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0983 
Symbol 
ID8708896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1116825 
End bp1117433 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content46% 
IMG OID646483078 
Producthypothetical protein 
Protein accessionYP_003374193 
Protein GI283783439 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.597017 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTGTGGTG GTTTTGATGG TTCTGAGAAT GATGATTTTA CGTGTTTTAA GCTCGAAACG 
TTGAGTGGTT TTATTTTCAC ACCTCGCTAT GGGTATGATC AGCGTCCTAC GATTTGGAAT 
CCTAAAGAGT GGGGTGGGCG TATTCCTCGT GGTGAAGTTA TTGCTGCTAT GGATGAGCTT 
GCTCACAAGT ATAAGTTTGT GCGTATTTAT TGTGACCCGG GGTTTAAGGA TGAGATGAGT 
TGGGAATCTC AAATTGATGC TTGGGCGCGC GCGTATGGTG AGCGTGTTTT TGTTCCGTGG 
GTTATGAACG GTAGTAATCG TATCACGGCT GTTTATAAGG CGTTGCGGCG GTTTGAGGAA 
GATTTAAGCA CACACCGTAT TACGCATGAT GGTTGTCCTA TTACTAACGC TCATATTGTG 
AACGCGCGGC GTATCCCTAA GACAGCTGAA AGATACGGTC TTGGTAAACC TCAGCAGGAT 
AGAAAGATTG ATGCTGCTGT TGCAACGATT CTTGCACATG AAGCAGCGTG TGACGCGCGC 
ATGGATGGTT GGGGTGAAGA AAAGCCGAAT CTTATTTATT CGCCGTCTAA TATGAGGAGA 
CTTAGATGA
 
Protein sequence
MCGGFDGSEN DDFTCFKLET LSGFIFTPRY GYDQRPTIWN PKEWGGRIPR GEVIAAMDEL 
AHKYKFVRIY CDPGFKDEMS WESQIDAWAR AYGERVFVPW VMNGSNRITA VYKALRRFEE 
DLSTHRITHD GCPITNAHIV NARRIPKTAE RYGLGKPQQD RKIDAAVATI LAHEAACDAR 
MDGWGEEKPN LIYSPSNMRR LR