| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0949 |
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| Symbol | |
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| ID | 8709586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1091901 |
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| End bp | 1093712 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483046 |
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| Product | AMP-binding enzyme |
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| Protein accession | YP_003374162 |
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| Protein GI | 283783408 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGAAT ATTCTCGTCC ACTTGATGAG TCTATTGATA CAGATGTTAA TGTTTTCTCA
CTGCTAGAAG AGCGAGCAGA GCGCAATCCT AATGGTTCTT TGGTTGAATA CGTTGGAGCT
GACGGCGTTT GGAAGTCATA TACTGCTGAA GAATTTAGAG ATAAAGTAAT AGCTGTTGCT
AAAGGCTTTA TTGCTAGAGG AGTAATGCCT GGTGACGCTG TGTCAATTAT TGCTCACACT
TCATGGCAAT GGACAGTTCT TGATATGGCT ATTATGTCTA TAGGCGCATT GACAGTGCCA
ATTTATGAAA CAAGCTCTTC GCTGCAAATA CAACATATTG TTCAAGATTC TCAAGTATGT
TCAATATTTG TGGAGTCTCC TGAAATGTTG CCGAAAGTAG AGGCTGTTCA AGAAGAATGT
CCTACTCTTC ACGACGTATA TGTGATGAAT CGTGGTGCTA TCGACGCGTG CATTGAATAC
GGTAAAGCAG TAACTGATGC TGAATTTTAT GAGCGAGTGC ACGCTGTTAA TGGAAGTGAC
ATAGCAACAA TTGTGTACAC TTCAGGTTCA ACTGGTGAGC CAAAAGGAAT TGAACTTACT
CATAGCAATT TTGTCTTTAT TGCTAAATCA GGTGTTATTT CTATGCCAGA CATTGCGTTA
AAAGGCAGCC CGCGTCTTTT GCTGTTCTTG CCTCTTGCGC ACGTTTTTGC TAGGTTTATG
CAATTGTTCT GCTTTGCTGG AAATATAACT CTTGGTTTGA CGAGTAATTT GAAAACTGTA
TTGTCTGATT TTCAAACTTT TAAACCAACA TTTATTCTTG GGGTTCCACG CATTTTTGAG
AAGATTTACA ATGCTGCTTC TCAAAAAGCA GGCAGAGGAG TAAAAGGTTT TATTTTTGCT
TATGCATCTA AGGTTGCTCG CGAATGGTCT CGCGCTCAAC AGTCTAGTTC AATGGTTCCT
CCAATGCTCG CTCTTAGCCA TTCAATATGT AAAAAATTAG TGTATGCTCC ACTACTACAC
GTATTTGGAG GCTCTGTTTC ATACGCTATT TCGGGCGGTG CTCCTTTAGA TTTGTCGATT
GCACACTTCT TTAATGGCAT TGGTTTGCCT CTTCTAGAAG GCTATGGAAT GACAGAAACT
TGTGCTCCTT CTATGGTGAA TCCTACGACA GGTTATCGCA TTGGTACCGT TGGTTTGCCT
GTAAAGGGTG TATCTGTTGC TATTGCTGAT GATGGTGAAT TGTGTATTAA AAGTCCTGCA
GTGTGCAGAG GCTACCATAA TAATCCTGAG CTTACCAAAC AGCAGATTGT AAATGGCTGG
TTGCATACTG GAGATTTTGG ATCTTTAGAC GATGACGGTT TTGTGCGTAT TACAGGCAGA
AAGAAAGATC TTATTATTAC TGCTGGCGGT AAGAACTTAT CTCCAAATGC GTTAGAAGCT
TCATTAATGT CTTCACCTAT TATTTCTCAA GCTGTTGTTA TCGGAGACAG GAAGCCGTTT
GTTTCAGCAA TTATTGCGCT CGATTTATCA GAAGTAAATA CTTGGCTTTC TTCGCGTGGT
GCATGCCCCG TACGGTCTTT AAAAGAAGCT TCACATAACG GTATTGTGCG AGCAGAAGTT
GAACGTGCTG TTAGCAAAGC AAATGAGCTA GTTTCTAGAG CTGAGTCTAT TCGCAAGTTC
GAAATAGTTC CAGATGAGTT TACTCAAGCA AACGGTTTGA TTACGCCAAG TTTAAAGGCG
CGTCGTCAAG TTGTTGTAGA GCGTTATAAC GACCTTATCG AACACGTTAT TTATGCTCCA
CGCAAACGTT AG
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| Protein sequence | MQEYSRPLDE SIDTDVNVFS LLEERAERNP NGSLVEYVGA DGVWKSYTAE EFRDKVIAVA
KGFIARGVMP GDAVSIIAHT SWQWTVLDMA IMSIGALTVP IYETSSSLQI QHIVQDSQVC
SIFVESPEML PKVEAVQEEC PTLHDVYVMN RGAIDACIEY GKAVTDAEFY ERVHAVNGSD
IATIVYTSGS TGEPKGIELT HSNFVFIAKS GVISMPDIAL KGSPRLLLFL PLAHVFARFM
QLFCFAGNIT LGLTSNLKTV LSDFQTFKPT FILGVPRIFE KIYNAASQKA GRGVKGFIFA
YASKVAREWS RAQQSSSMVP PMLALSHSIC KKLVYAPLLH VFGGSVSYAI SGGAPLDLSI
AHFFNGIGLP LLEGYGMTET CAPSMVNPTT GYRIGTVGLP VKGVSVAIAD DGELCIKSPA
VCRGYHNNPE LTKQQIVNGW LHTGDFGSLD DDGFVRITGR KKDLIITAGG KNLSPNALEA
SLMSSPIISQ AVVIGDRKPF VSAIIALDLS EVNTWLSSRG ACPVRSLKEA SHNGIVRAEV
ERAVSKANEL VSRAESIRKF EIVPDEFTQA NGLITPSLKA RRQVVVERYN DLIEHVIYAP
RKR
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