Gene HMPREF0424_0938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0938 
SymbolrimI 
ID8708879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1078750 
End bp1079280 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content42% 
IMG OID646483035 
Productribosomal-protein-alanine acetyltransferase 
Protein accessionYP_003374151 
Protein GI283783397 
COG category[R] General function prediction only 
COG ID[COG0456] Acetyltransferases 
TIGRFAM ID[TIGR01575] ribosomal-protein-alanine acetyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGTTG ATATAACGCG TTCTCAATTT CCAGCAGTAG CCGAGAATTG CAATATAGTT 
CCAAAGTGCG ATTTTACTTG CGATGAGTTA GCGCAAAAAA TAGCGCCTAT TGAAGCTGAC 
TTGTTTGGCA AAGGCTCATG GAATGAGAGC ATGATTTCGC AAGAATTGCA AGCTCCTATG 
CGCGCGTATT ACGCTCAAAT CGACGAAAAT ACGCATACAT TATGCGGGTA TGCTGGCTAC 
TGGTTTGACG GCGATGACGC GCAAATAATG ACAATTGGCG TTGCAAAACA ATATCAACGA 
AAAAGCATAG CCTCTAAGCT TTTGTTGATA ATGATTAAAA CTGCAAAACA AATTGGTGCT 
AAACGCATGC TGCTAGAAGT GCGAGTTGAC AATGTTCCTG CGCTCGCGTT GTATGAACGT 
TTTGGTTTTA AGAAAATGGG TTTGCGAAAA CGTTACTATC AGCCGGAAGG TGTGGATGCG 
TACACAATGT GCGCTGATCT AACCGCAAAA AATAACGGAA CTGAGGAATA A
 
Protein sequence
MIVDITRSQF PAVAENCNIV PKCDFTCDEL AQKIAPIEAD LFGKGSWNES MISQELQAPM 
RAYYAQIDEN THTLCGYAGY WFDGDDAQIM TIGVAKQYQR KSIASKLLLI MIKTAKQIGA 
KRMLLEVRVD NVPALALYER FGFKKMGLRK RYYQPEGVDA YTMCADLTAK NNGTEE