| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0934 |
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| Symbol | metE |
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| ID | 8708944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1072979 |
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| End bp | 1075333 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646483031 |
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| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
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| Protein accession | YP_003374147 |
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| Protein GI | 283783393 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
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| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCGG TTTTTACTTC TGTTTCCGGT TTTCCACGTA TTGGCGCTAA TCGTGAGTTG
AAGAAGATTA TTGAACGTTA CTGGAAGCAG GATGCTTCTT TGGATGAAGT GCGTGAAGTT
GCTCAGTCTT TGCGAGCTAA GCATTGGCGT TTGCAAGCTG AAGCTGGGAT TGATTTAATT
CCAAGTAATG ATTTTAGCTA CTATGACCAA ATGCTCGATA CTGCTATTTT GCTTGGTGCT
GTGCCTGAGC GTTACAATGC TTTGAATTTT GAGCATGCTG AGGATACGCT TTTTGCCATC
GCGCGCGGCT ACCAGGGTGA GCGCGGCGAT GTGACGGCTT TGCCTATGAA GAAGTGGTTT
ACTACGAACT ACCACTATAT TGTGCCGGAA GTTGAGAATC CGCAAGACTT GCATTTGGCT
GGAACTAAGC CTTTTGACGA GTTTTTAGAG GCTCGCGCGC AGGGTTTGGA AACTAAGCCT
GTGCTGATTG GTCCGTACAC TTTTTTGAAG TTGGCTCGTA CTCCTGAAGC TCAGGAGTTG
GAAGTAACAG AGTCTGTGAT TTCGGCTCTG GCTTTTGCTT ATGCGAGTAT TGTTAAGCGT
TTTGGCGAGC TTCACGCAAC TTGGTTGCAA TTTGATGAGC CTTATTTGGC GTTGGATAAA
GAGCAAGGCG ATTTGGAGCT TTTTGAAGCT TTGTATAAGC CTTTGCTTGA AGTCAGGAGT
GCGGAAGTTA AGCTTCTTCT TAACACGTAT TTTGGCAATA TTGCTGACGC TTACGAAACT
GTGAATAATC TTGGTTTTGA CGGCGTTGGC GTTGATTTAG TGGAAGGCAA GGAAGAAAAT
CTTGCAGCCA TTGAGCGTTA TGGTGTGAAC GAAAAAACTA CGCTTTTTGC AGGCGTTGTG
AACGGCCGTA ATATTTGGCG CAACGATTAT GCTGTAAGCC TTGGTTTGGT TGATGCTTTG
CGCGAGAATA TTACGGATCG CGTAGCTGTT TCTACTGCTT GCTCGCTTCT TCACGTGCCT
TTTAGCACTG TTGGTGAGGA TGCTTTGGGT GCGGATGTGT TGCAACATTT TGCTTTTGCT
GTTGAAAAGT TGCAAGAGAT TCGCGATATT GCCAATCTTT CTGCAGAAGG CGACGAAAGC
CGCAAATCTA GTAACGTTTT AGCTAAAAAT CAGGCTTTGT TTGACGGTTC GCGCGTGAAG
GCGGATGCTG TTGTTGCTAA TCGTCTTGCG AATCTTAAAG ATTCTGATTT TGTGCGATTG
CCTAAGAGGG CGGAGCGTCA GCGTCTGCAA AAAGAAGCTC TTGGCTTGCC GGATTTGCCA
ACGACAACTA TTGGATCCTT CCCACAAACT AAGGATATTC GTAACGCTCG TGCTGATCTT
CGTAAGGGCG AAATTACTCG CGAAGCTTAC GACGAGTTTA TGCGCAATCG CATTGCTCAG
TGCATTGAGC ATCAGGAGCA AATTGGCTTG GATGTGCTTG TTCACGGCGA GTTTGAGCGA
AACGATATGG TTGAATATTT CGGCCAGCAT TTGTGCGGCT TTAAGTTTAC GAAGAACGCT
TGGGTGCAGT CTTATGGTAC TCGCTGCGTG AAGCCTCCAA TCGTGTGGTC GGATGTTTCT
CGCGAGTCTG CAATTACTGT GGCTTGGAGT GCTTATGCTC AAAGCTGCAC GAAGCATATT
GTTAAGGGCA TGCTTACTGG TCCGGTGACG ATTCTTAACT GGTCTTGGCC TCGCGAGGAT
ATTACTCACG AGCAGCAGAC TCAGCAGTTG GCTCTTGCTA TTCGCGATGA AGTGTTGGAT
TTGGAGCGTG CGGGTATTCG TGTGATTCAG ATTGATGAGG CTGCTTTGCG TGAAAAGTTG
CCGCTTCGTC GCTCTGATTG GCATAAGAAG TATTTGGATT GGGCGATTGC TGCTTTCCGC
CTTGTTCATT CTGCAGTTGC TGCGACTACG CAAATTCACA CGCATATGTG CTATTCGGAG
TTTAATGACA TTATTCGTGA CATTGATGCT ATGGATGCGG ATGTGATTTC TTTCGAGGCT
TCTCGCGGTG ACTTGGTTGT GCTTGACGCT ATTCACGACG CGCATTTTGA GACTGAGGCT
GGCCCTGGAG TTTACGATAT TCATTCTCCG CGCGTTCCTG GTAAGGCTGA ACTTGTTGAG
CGTATTCACG AGATTTTGCG TAAGATGCCT GCCGAGAAGC TTTGGATTAA CCCGGATTGC
GGTCTTAAAA CTCGAGGCGA CGCTGAAACT TGGCCAAGCT TGGAGAATCT TGTCGCTGCA
GCTAAAGAGG TTCGCACGCA ATTGCAAGCT AACAAGCTAA GCAATCAGCA GTGCAATTCT
CAGTGCAAGG GGTGA
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| Protein sequence | MSAVFTSVSG FPRIGANREL KKIIERYWKQ DASLDEVREV AQSLRAKHWR LQAEAGIDLI
PSNDFSYYDQ MLDTAILLGA VPERYNALNF EHAEDTLFAI ARGYQGERGD VTALPMKKWF
TTNYHYIVPE VENPQDLHLA GTKPFDEFLE ARAQGLETKP VLIGPYTFLK LARTPEAQEL
EVTESVISAL AFAYASIVKR FGELHATWLQ FDEPYLALDK EQGDLELFEA LYKPLLEVRS
AEVKLLLNTY FGNIADAYET VNNLGFDGVG VDLVEGKEEN LAAIERYGVN EKTTLFAGVV
NGRNIWRNDY AVSLGLVDAL RENITDRVAV STACSLLHVP FSTVGEDALG ADVLQHFAFA
VEKLQEIRDI ANLSAEGDES RKSSNVLAKN QALFDGSRVK ADAVVANRLA NLKDSDFVRL
PKRAERQRLQ KEALGLPDLP TTTIGSFPQT KDIRNARADL RKGEITREAY DEFMRNRIAQ
CIEHQEQIGL DVLVHGEFER NDMVEYFGQH LCGFKFTKNA WVQSYGTRCV KPPIVWSDVS
RESAITVAWS AYAQSCTKHI VKGMLTGPVT ILNWSWPRED ITHEQQTQQL ALAIRDEVLD
LERAGIRVIQ IDEAALREKL PLRRSDWHKK YLDWAIAAFR LVHSAVAATT QIHTHMCYSE
FNDIIRDIDA MDADVISFEA SRGDLVVLDA IHDAHFETEA GPGVYDIHSP RVPGKAELVE
RIHEILRKMP AEKLWINPDC GLKTRGDAET WPSLENLVAA AKEVRTQLQA NKLSNQQCNS
QCKG
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