Gene HMPREF0424_0925 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0925 
SymbolpyrF_2 
ID8709863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1056304 
End bp1057347 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content45% 
IMG OID646483023 
Productorotidine 5'-phosphate decarboxylase 
Protein accessionYP_003374139 
Protein GI283783385 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGAAC TTATTGAAGC GATTGCAGCC AAGCAAAATC CTAGTGTTGT GGGCTTGGAC 
CCTAAGCCAG GTATTGTACC AGCCGAAATT ATTAGCTCTC TTGCGGACGA AGTTTTGCAA 
GAAGTAGAAG GCGAGGATGC GCTGCCAACG CTTTTAGCTA CAGCTTATTT TGAGTTTAAT 
CGCGCTATTA TCGACGCGGT TGCAGATTTT GTGCCGGCTG TAAAGCCGCA AATTGCGATG 
TACGAAGCAC TAGGTTCCGC TGGAATGGAC ACGTACGCAA TGACTTGCGA ATACGCAAAA 
TCGCAAGGAT TAGTTGTAAT AGGTGACGCA AAGCGCGGAG ATATTGGCTC TACAGCTGGT 
CAGTATGCTG CTCATTTAAG CGGTTTCGCT AATCTTTCTT CATATTTTGA AGACGAAAAT 
GCTACTGGTA ACGCGCTTCC TCAATCTCTT AAAAATCTTC TAAAAAGCTC TAAAAATCTT 
GACGTTTGGC ATGAAGATTC GCTTACAGTA AACCCTTATA TGGGTTCGGA TGGCGTGAAG 
CCTTTTATCG ATGAAGCGGT AGCGCACGAT AAAAGCATTT TTGTGCTGCT TCGCACTTCG 
AATCCTTCTA GCAAAGAGCT GCAGGAGCTT ATTTTGCAAG ATGGCAAGCC AGTGTATGAG 
CATATGGCTG ATTTGATTGA GAACTGGGGT GCTTCAAGCA TTGGTAAGCA CGGTTATTCA 
AGAGTTGGTG CAGTTGTAGG TGCCACGCAT CCGCAGGAGG GCAAACATTT GCGCGAGATT 
ATGCCGCACA CTTTCTTCTT GGTTCCAGGC TATGGTGCTC AAGGCGGTAC TGCTCAAGAT 
GTTGCTGGAA TGTTTGATGC AAATTCTGAA GGTGCTATTG TCAATTCTTC GCGCGGTATT 
ATTGGTGCTT GGAAAAAGTC TGAAGATTAC GCTAAAAATC AAGGGCACAT GTCTCTCGAT 
GACATTCTTG ATATTGTGCG TGATTCTGCA GCTGTTGCTG CGAAAAATAT GCGTGACGAC 
TTGAGAAATG CAGTGTATCG CTAG
 
Protein sequence
MDELIEAIAA KQNPSVVGLD PKPGIVPAEI ISSLADEVLQ EVEGEDALPT LLATAYFEFN 
RAIIDAVADF VPAVKPQIAM YEALGSAGMD TYAMTCEYAK SQGLVVIGDA KRGDIGSTAG 
QYAAHLSGFA NLSSYFEDEN ATGNALPQSL KNLLKSSKNL DVWHEDSLTV NPYMGSDGVK 
PFIDEAVAHD KSIFVLLRTS NPSSKELQEL ILQDGKPVYE HMADLIENWG ASSIGKHGYS 
RVGAVVGATH PQEGKHLREI MPHTFFLVPG YGAQGGTAQD VAGMFDANSE GAIVNSSRGI 
IGAWKKSEDY AKNQGHMSLD DILDIVRDSA AVAAKNMRDD LRNAVYR