Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0923 |
Symbol | |
ID | 8709427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1054306 |
End bp | 1055307 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646483021 |
Product | dihydroorotate dehydrogenase 1B |
Protein accession | YP_003374137 |
Protein GI | 283783383 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0167] Dihydroorotate dehydrogenase |
TIGRFAM ID | [TIGR01037] dihydroorotate dehydrogenase (subfamily 1) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCTG TAAATAATGA CGAAAATAAT TCTGTAAATA ACGCAAATTC CGCAACAAAT TCCGCTGAAA CTTTTGGCTT TGACACTAGC CACGTTTGGA AACATCCAAC TCAAGTTGCA GGCGTTAAGT GGAAAAACAT GGTTGGTACA GCTTCTGGAA CTTTCCAGCT TGCAGCTTGC CGACGTTTTT ACGACGTAAG CCAACTCGGC GCAATTTGCA CAAAAGGCGT TTCACCTGTT CCGTGGGAAG GAAATCCTTC TCCGCGCACT GCAGAATCTC CTTCTGGCAT GGTAAACGCA GTTGGATTGC AAAATCCTGG CGTCGACCAC TACTTAGTAG ACGAGCTTCC GAAACTAAAG AAAATGGGAG CGCTTGTTAT TACTAATGTT GCAGGGCACA GTGACGACGA TTATGCGCAA GTTGTTGAAA AGCTTGCAGA TTCTGCTGCA GACATGCTTG AAATTAACGT AAGCTGCCCA AACGTAACTC ACGGCGGAAT GAGCGTTGGC ACGGATCCGG TGGCATTACA CCGCTTAATT AAGCGACTTC GCGCAATGAC AGATAAGCCA ATGATTGTAA AAATGACGCC AAATGTGACG GATATTGTCT CGATTTGCAA AGCTGCAGTT GATGCTGGAG CAGATGCTTT AAGCATGATT AATACGCTTG TTGGTTTGCG AATTGATATT CGAACAGGCG AGCCTATTAT TGCAAACCGC ACAGGCGGTG TTTCCGGTCC TGCAATCTTC CCGATTGGTC TTGGATTTGT GTGGCGAGTT CGTCAAGCTA TGCCAGATAT TCCAATTATT GGCATTGGTG GCATTGATTC CGGCGAAAAA GCTTTGGAAT ACTTGTATGC TGGCGCTAAT GCTGTAGAAG TTGGTGCTGC CGCTTTGGTG GATCCTACTG CTCCTATTCG CATTGCTCGC GAGCTTGATG ATTTGCTTGA TTCTCGTCCA AAGCTTGCGT CTTTACTTGC CGAAGGAAAG ACTTGGCGCT GA
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Protein sequence | MNAVNNDENN SVNNANSATN SAETFGFDTS HVWKHPTQVA GVKWKNMVGT ASGTFQLAAC RRFYDVSQLG AICTKGVSPV PWEGNPSPRT AESPSGMVNA VGLQNPGVDH YLVDELPKLK KMGALVITNV AGHSDDDYAQ VVEKLADSAA DMLEINVSCP NVTHGGMSVG TDPVALHRLI KRLRAMTDKP MIVKMTPNVT DIVSICKAAV DAGADALSMI NTLVGLRIDI RTGEPIIANR TGGVSGPAIF PIGLGFVWRV RQAMPDIPII GIGGIDSGEK ALEYLYAGAN AVEVGAAALV DPTAPIRIAR ELDDLLDSRP KLASLLAEGK TWR
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