Gene HMPREF0424_0920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0920 
Symbolefp 
ID8708918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1052459 
End bp1053022 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content48% 
IMG OID646483018 
Producttranslation elongation factor P 
Protein accessionYP_003374134 
Protein GI283783380 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0231] Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 
TIGRFAM ID[TIGR00038] translation elongation factor P 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCACAGA CTACCAATGA TATTAAGAAT GGATCGGTTT TGAACCTTGA CGGTCAGCTT 
TGGACCGTCG TTAAGTTCCA GCACGTGAAG CCAGGCAAGG GTCCTGCTTT TGTGCGTACC 
ACCATTAAGA ACGTGCTCTC GGGCAAGATT GTCGACAAGA CTTTTAATGC CGGCATGAAG 
ATGGAGTTCG AGACCGTTGA TAACCGCACG TTGCAATATT CATACGAAGA TGGCGACAAC 
TTCGTCTTTA TGGATATGAC CACTTACGAC CAGGTTTATA TTCCTAAGGT TTTAGTTGGC 
GAGCAGAGCA AGTATTTGCT TGAGGGCACC GACTGCATCG TAAGCTTCCA TGACGGTACT 
CCTTTGAGCG TTGAGCTTCC AGCTTCAGTG ATTTTGACTG TTACTCACAC TGAGCCAGGC 
TTGCAAGGCA ACCGTTCTAA CGCTGGTACT AAGCCTGCAA CAGTGGAAAC CGGTGCTGAA 
ATCCAGGTTC CACTCTTTGT GGGTGAAGGC GAAAAGGTGA AGGTCGACAC TCGTGACGGC 
TCTTATCTTG GTCGTGAAAA CTAA
 
Protein sequence
MAQTTNDIKN GSVLNLDGQL WTVVKFQHVK PGKGPAFVRT TIKNVLSGKI VDKTFNAGMK 
MEFETVDNRT LQYSYEDGDN FVFMDMTTYD QVYIPKVLVG EQSKYLLEGT DCIVSFHDGT 
PLSVELPASV ILTVTHTEPG LQGNRSNAGT KPATVETGAE IQVPLFVGEG EKVKVDTRDG 
SYLGREN