Gene HMPREF0424_0919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0919 
SymbolnusB 
ID8709862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1051809 
End bp1052291 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content48% 
IMG OID646483017 
Producttranscription antitermination factor NusB 
Protein accessionYP_003374133 
Protein GI283783379 
COG category[K] Transcription 
COG ID[COG0781] Transcription termination factor 
TIGRFAM ID[TIGR01951] transcription antitermination factor NusB 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGTT CTACCGCTCG TAAAAGGGCT TTGAATACGC TGTATGAGGC GGATGAGAAG 
AATCAACATA TTCTTTCTTT GCTTGAGGAG CGAGTTAAGG AGCCTGGCGC TCAAACTCCG 
CTCCCAGAGT ACGCTGTTGA GATTGTTCGA GGCGTAGGAG AGCGACGTAA CAGAATCGAC 
AAGACGCTAA ACCGCTATTC GACTGGCTGG AAAGTTGGCA GAATGGCTGT TATCGATCGC 
AATATTTTGC GCATTGCGGT GTGGGAAATG CTTCTTAACG ATGAGATTCC AGATAAAGTT 
GCTATTGACG AGGCGATTGC GCTCGCAAAA ATGTATAGCG ATGACGAAGC TATTGCGTTT 
ATTCACGGCT TACTAAGCGC GATTATGGCA GATAAAGATG CTTGCTTGGC AAAGTTTAAC 
GGCGAATCTT CTCCTGAAGA CGCTGCTACG GAAGAGTCTA CGGAAGAAGC TGCTGCCGAG 
TAA
 
Protein sequence
MARSTARKRA LNTLYEADEK NQHILSLLEE RVKEPGAQTP LPEYAVEIVR GVGERRNRID 
KTLNRYSTGW KVGRMAVIDR NILRIAVWEM LLNDEIPDKV AIDEAIALAK MYSDDEAIAF 
IHGLLSAIMA DKDACLAKFN GESSPEDAAT EESTEEAAAE