| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0916 |
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| Symbol | pyrF_1 |
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| ID | 8709241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1046168 |
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| End bp | 1047079 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483014 |
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| Product | orotidine 5'-phosphate decarboxylase |
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| Protein accession | YP_003374130 |
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| Protein GI | 283783376 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
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| TIGRFAM ID | [TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGAGA GCATTCGTGA TCAAGAAGTG CAGGCGCAAC GATCCGATTT TGGTTTGCGT
TTGAAGAACG CTATGGCAAA ATATGGACCA TTGTGTGTTG GAATCGATCC TCATCGCAAA
ATGCTGCTTA ATTGGGGATA CAACATGGAT GCTCTTGGAG CTGAACTTTT TTCTATGCGC
ATGCTGCAAG CTATGAATGG TAGGGCAGCG GCAGTTAAAT TCCAATCCAG CATGTTTGAG
CGCTATGGTT CTAAGGGTTT CGCAGCGCTT GAGCGTGTGC TGTATGCCGC TCGTCAAATG
GATATTATTA CTATTGTTGA TTGCGGTCAT GGAGGATTGT CTACTACTAT TTCTGCGCTT
GCAGACGCAT ATTTTAAGCC TGGAGCTCCG CTTCTTGCTG ATGCTATTAC TTTGCTTCCT
TATTATGGTG CACGTTCTAT GGGCGGCTTA ATTAACGAAG CTCTTAATAA CGGTCGCGGT
GTTTTTATTG CGTCTCTAAC TTCTAATCGC GAAGGCGCAA GTTTGCAAAC TGCTATTAGG
CAAAGCGGAA CTTACCGCGG AACTACTGTA GCTCACGGAA TTGCTCAAAC GGCTCAAAGT
TTTAACAATA AAACTAAAGG AATGGGTTCT GTTGGTTTAA TTGTTGGAGC GACTATTGGC
GACTGGATGA ACGGTGGTGG AATTGACGTA ACCAGTTTTA CTGGTCCAAT TCTTTCTCCT
GGTTATGGGT GGCAAGGTGC AGAAGCTGAC GATTTAAAGC GTGTTTTTGC TGGTACACAT
GGTAATGTAT TGGTAACTGT TTCGCGTTCG ATTGCGTCGC ATGGTCCAAA TATTGGTGAA
CTTTCGGCTG CAACTGAACG CATAGCATTG GATATTCGTC AGGCTCTTGT TGATTCAGGC
GAATGTGTGT AA
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| Protein sequence | MTESIRDQEV QAQRSDFGLR LKNAMAKYGP LCVGIDPHRK MLLNWGYNMD ALGAELFSMR
MLQAMNGRAA AVKFQSSMFE RYGSKGFAAL ERVLYAARQM DIITIVDCGH GGLSTTISAL
ADAYFKPGAP LLADAITLLP YYGARSMGGL INEALNNGRG VFIASLTSNR EGASLQTAIR
QSGTYRGTTV AHGIAQTAQS FNNKTKGMGS VGLIVGATIG DWMNGGGIDV TSFTGPILSP
GYGWQGAEAD DLKRVFAGTH GNVLVTVSRS IASHGPNIGE LSAATERIAL DIRQALVDSG
ECV
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