| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0914 |
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| Symbol | rpoZ |
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| ID | 8708903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1045177 |
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| End bp | 1045461 |
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| Gene Length | 285 bp |
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| Protein Length | 94 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483012 |
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| Product | DNA-directed RNA polymerase, omega subunit |
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| Protein accession | YP_003374128 |
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| Protein GI | 283783374 |
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| COG category | [K] Transcription |
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| COG ID | [COG1758] DNA-directed RNA polymerase, subunit K/omega |
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| TIGRFAM ID | [TIGR00690] DNA-directed RNA polymerase, omega subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATTAG GCACTCAGCC AACACCTACT GGTCTTGCGA ATCCACCGAT TGATGATTTA
ATGCAACATG CGGATTCCAA GTATGCGCTT GCCTTATTTG CTGCAAAACG AGCACGTCAA
ATTAATGCTT ATTTTACTCA GCTTAATGAA GGTTTGCTTC AAAATGTTGG CCCACTAGTT
GAGTATCAAA ATCAAGAAAA GCCTTTAGCT ATTGCTTTCC GCGAAATTAA TGCTGGATTG
CTTGAAGAGA CTCTTGGTGA GGACGATTTA AGCGAAGGTA ATTAA
|
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| Protein sequence | MALGTQPTPT GLANPPIDDL MQHADSKYAL ALFAAKRARQ INAYFTQLNE GLLQNVGPLV
EYQNQEKPLA IAFREINAGL LEETLGEDDL SEGN
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