| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0905 |
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| Symbol | |
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| ID | 8709617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1033506 |
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| End bp | 1034333 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483003 |
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| Product | HAD hydrolase, family IIB |
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| Protein accession | YP_003374119 |
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| Protein GI | 283783365 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
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| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCGTT TTTCTCCTTC TTTATTAATT GCTGATCTTG ACGGCACTAT GCTTCACGAT
TCCGATACTT TTGAAGGCCG CTTTTTAAGC CGCGAAACTA TGCAAGCTGC TGAGCGTTTG
CATGAATCTG GGATTCCGCT TGCTATTATT ACGGCTCGTC CTGTTGGAAG TGCTTTTGAT
TTTGTTCACG ATTTAAAAGC TCAAGTTTGC GCGTATCTCA ATGGTGCGCT TATTGATTTT
GATTGCGCTC ACAGCACTGT TTCTGAACTT ACTTCGCAGC GAAGCATTGA TACTCTTACT
CGCTTTGGTT TTGACTCTAA TCTTGCTGCT GATGTTTGCC TGCAATTGCT TGATAAAATA
CCTACACTCC GTCTTGGTAT TGTTATGAAC GATGTTCGTT ACACTAATTT TGATGTTCGT
ATGCTTTGGA ACGAGCAGGA TTTTATTATT ACCGATTTTT CTAATGTTCC GAGTGGCATT
GCAGACAAGA TTATTATTGT TCCTCGAGAG AGTGAGAAGG AAAAACTTCA GAGCATTCTT
CCAAGCGATT TTTCATTGCA TATTAGCGAA GACGTGTTGT GGATGCTCAC GAATCCTCTT
GCAAACAAAG GACACGCGCT GAACGTTATT TGCGATCGTT TGGGCGTAAA GACGAGCCGC
ACAGTTGTTT TTGGCGACGA TATTATTGAC ATCGACATGT TCCGTGCTGG TGGTTATGGG
GTAGCGGTGG CGAATAGTAA TCCGCGTTTG CTTGCGATTG CGGACGAAGT TTGCGATTCC
AACAATGACG ACGGCGTTGC CAACTGGCTT CAAAACGAAT TGCTCTAG
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| Protein sequence | MLRFSPSLLI ADLDGTMLHD SDTFEGRFLS RETMQAAERL HESGIPLAII TARPVGSAFD
FVHDLKAQVC AYLNGALIDF DCAHSTVSEL TSQRSIDTLT RFGFDSNLAA DVCLQLLDKI
PTLRLGIVMN DVRYTNFDVR MLWNEQDFII TDFSNVPSGI ADKIIIVPRE SEKEKLQSIL
PSDFSLHISE DVLWMLTNPL ANKGHALNVI CDRLGVKTSR TVVFGDDIID IDMFRAGGYG
VAVANSNPRL LAIADEVCDS NNDDGVANWL QNELL
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