| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0904 |
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| Symbol | |
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| ID | 8709350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1031614 |
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| End bp | 1033245 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646483002 |
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| Product | divergent AAA domain protein |
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| Protein accession | YP_003374118 |
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| Protein GI | 283783364 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAATA TAAATTCGCT GTCTTTACTA AGAGAGAGTA ATCAATTAGA AGCGAAAGCG
GCTTCAAACG GTACGCCGAG AAGTATGTGG GAAACGTATT GTGCTTTTGC TAATACGAAT
GGTGGAACTA TCTTGCTGGG TGTAGGCGAA GATGCTCAGC ATAATTTACA GCTTGTTGGC
GTAAATAACC CTGAACATAT GGTAAAAGAT ATTTGGGATA CGCTAAATAA TAAGAATAAA
ATTAGTTCGA ATATTCTTAT TGAAGAAAAT ATTTCTATTG AACAGATGGA TGATAACAAA
TCTATTATTC GCATAACCGT TCCAAGAGCA AATCGTTCTG ATAAACCGAT TTATATTAAT
GGAAATCCTA TAGGCGGTAC GTATCGTCGT AATTTCGAAG GCGACTACAA ATGTTCGCAA
GAAGAGTATC AAGCGATGGT CAGAGACAAT GGTTCGAGCG TAAATTCTAT GGATCAATCT
CCACTGTTGC AACACAGTGT TGACGATTTT GATATGGAGA CTGTGCGCTC TTACCGCAAT
ATGCTAAGTG CAGTGCGTCC TCAACATCCT TGGCTTACGC TTGATACAGA TGAATTTCTT
ATGAGAATCG GAGCGTTAGC AAAAGACGAG TCGAATAAAT TGCATCCTAC TCGATCGGGT
CTTTTAATGT TTGGTCAGGA GTGGTGCATT ATTACGGAAT TTCCGTACTA TTTTCTCGAC
TACAGAGAAA TTACCAATGC TGATAGTAGG TGGAGTCATA GGATTGTCAG CTCGGATGGT
TCGTGGAGTG GAAATCTTTA TGATTTTTGG AGTATTGTAT GGCAGCGTCT TTCTCGTAAA
ATTGATGTAC CATTTTTGCT TAATTCGCAG TCATTACGAG TTGATGATAC TCCGTTGCAT
ATGGCAGTTA GAGAAGCCCT TGCAAACACG TTGATTCATG CTGATTATTA TATGCGAGGT
AATACTGTTA TTACATATAA TGATGCTGTG AGTACTGATG TTGATGGTTC TTCACAATCT
TCTATAGAAA CAAATAGCGC AAATGATGGT TTTAAGCTTT CTTTTGCAAA CCCGGGTTGC
TTACGTATGC CTGTAGAAGT GGCTTTAGCT GGAGGTTTTT CTGATTCTCG GAATCCAGCA
CTGCTTAAAA TGTTCGCGCT GATTTCTGTT GTTGAACGTG CTGGAAGCGG ATTTGATGCT
ATGAGAGCTG GTTGTGATTG GGCTGGAATA CGCTATCCAA TGTTAAGTGA GTCCTTTAAT
CCAGACCGTA CTACTCTTGA ATTTTTTGTA AGCGATAAGA ATAACTTTGT ATCTGGTTCT
TCAAAAAACA AAACTGAACT TAATGCTAAT TCATTGAATT TAGTGAACGG TACTTATAAT
TCAGAACTTA CTACAAATTC ACTTTCGCAA GATTCTAATA ACTCGCATAA ACGTATGAGC
GTTGACGATT GCTATAAAAA GATTATTGAA GCAGTACATA ATCATGGAAC AATAAAGCGT
GAGCAAGTGC AAAATATTCT TAACGTGGGT AGTACCAAGG CTAAGCAATT GTTATCTGAT
TTAGTTAGTA GAGGAGATAT TTCAGTTTGT GGAAAAGGTC GAGCTACTAC CTACGTTTTT
AACCGCAGTT AA
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| Protein sequence | MFNINSLSLL RESNQLEAKA ASNGTPRSMW ETYCAFANTN GGTILLGVGE DAQHNLQLVG
VNNPEHMVKD IWDTLNNKNK ISSNILIEEN ISIEQMDDNK SIIRITVPRA NRSDKPIYIN
GNPIGGTYRR NFEGDYKCSQ EEYQAMVRDN GSSVNSMDQS PLLQHSVDDF DMETVRSYRN
MLSAVRPQHP WLTLDTDEFL MRIGALAKDE SNKLHPTRSG LLMFGQEWCI ITEFPYYFLD
YREITNADSR WSHRIVSSDG SWSGNLYDFW SIVWQRLSRK IDVPFLLNSQ SLRVDDTPLH
MAVREALANT LIHADYYMRG NTVITYNDAV STDVDGSSQS SIETNSANDG FKLSFANPGC
LRMPVEVALA GGFSDSRNPA LLKMFALISV VERAGSGFDA MRAGCDWAGI RYPMLSESFN
PDRTTLEFFV SDKNNFVSGS SKNKTELNAN SLNLVNGTYN SELTTNSLSQ DSNNSHKRMS
VDDCYKKIIE AVHNHGTIKR EQVQNILNVG STKAKQLLSD LVSRGDISVC GKGRATTYVF
NRS
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