| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0902 |
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| Symbol | tkt |
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| ID | 8709342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1027883 |
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| End bp | 1029982 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646483000 |
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| Product | transketolase |
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| Protein accession | YP_003374116 |
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| Protein GI | 283783362 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATT TCAACTGGTC TGCATTAGAC GAGCGCGCCG TAAAAATGGC GAAGGTTCTC
TCGGCTGATG CTGTTGAGCG AGCAGGACAC GGACATCCTG GCTCCCCTGT TTCATTAGCA
CCGATTGCGT ACACATTGTA CCAGCATTTC ATTAAGCACG ATCCAGCTGA CCCAAAGTGG
GCTGGCCGCG ATCGTTTTAT TCTTTCTGGC GGTCACGCTT CGCTTACGCA ATACGTGCAG
TTGTTCTTCT CTGGATACGG CTTGACTCTT GACGATCTCA AGTATTTCCG TGGCGGTGCA
GACACGCGTA CTCCAGGTCA CCCAGAATAC GGCTTGACTC CAGGCATCGA AATGACTACT
GGCCCACTCG GTCAGGGTCT TGCTTCCGCT GTTGGTTTCG CTTACGGCCA GCGCTTTGAG
CGTGGACTTC TCGATCCAGA AGCTCCAGCT GGCACCTCCC CATTCGATCA CAAGGTTTGG
GTTATCTGCG GCGAAGGCGA CGTTGAGGAA GGCGTTTCTT CTGAAGCTGC TTCCTTGGCT
GGAAACCAAA AGCTCGGCAA TTTGACCGTA ATCTTCGATG CAAACCACAT TCAGATTGAA
GGCGACACTA AGCTCACCTT CTCTGAAGAT ATTCTTGCTC GTTACCGTGC ATACGGTTGG
TACACCGATG AAGTGAGCTT CATCCAGCCA GACGGCTCCT ATAAGGAAGA CGTTCAGGCT
TTGGCTGCAG CTATTGAAAA GGCTCAGGAA GTTACCGATA AGCCTCACTT CATTAAGGTT
AATACTTTGA TTGCTTGGCC AACCCCAGGC AAGACCAACA ACGAAGCTTC CCACGGCTCC
AAGCTTGGCG AGGAAGCTGT GAAGGGCTTG AAGGAACTTT GCGGTTTCGA CCCAGAAGTT
TCGTTCCCAA TCGACGAAGA AGCTTTGGCT CACGCTCGCA AGGTTGCAGA GCGCGGCTTG
GCTGCTCACA AGGCTTGGGA CGAAGCTCTT GCAAAGTGGG CTGCCGCCAA CCCAGATAAG
GCTGCTCTTT ACGAGCGTCT TAAGGCTGGC AAGCTTCCTG AAGGCTTCGA CAAGGCTATT
GACGACTTGG TTGCTGGCTT CGAAGTTGGC TCTAAGGTTG CTACCCGTAA GGCTTCCGGC
GCAGTTCTTA ACGCAATTGC TGCTGTTATG CCAGAACTTT GGGGCGGTTC CGCTGATTTG
GGCGGCTCCA ATAACACCAA CATTAAGGGC GCTGACTCCT TCGGCCCATC CGAAGACGCA
ACCCGCACTT GGCCAAACGT TTCCGAGTAC GGTCGCCAGC TTCACTTTGG TGTGCGCGAG
TTCGCAATGG GTGCTATTAC CAACGGCATT TTGCTTGGTT CTGACACTCG ACCATTCAAT
GGTACATTCT TCCAGTTCTC TGACTACGAG CGTCCAGCAG TTCGCTTGGC TGCTTTGATG
GAGATTCCAA ACCTCTACGT TTGGACTCAC GACTCTGTAG CCTTGGGCGA AGATGGTCCA
ACTCACCAGC CAATCGAACA CTTGGCTGCT TTCCGCGCTA TTCCTCAGCT TGAGGTTGTG
CGCCCTGCAG ATGAGTACGA AACTGCTGAA GCTTACCGTT ACTTCTTCGA GAAGAAAAAC
AGCTATCCAA CTGCTATGAT TTTGACCCGC CAGGGCGTTC CAACCCTCGC TGAGACTGCT
GAAAAGGCTC GCGAAGGCGT GAAGCACGGC GCTTACGTTT TGGTTGATTG CGAAGGCACT
CCAGACGTAA TCATCATGGC AACCGGTTCC GAAGTTCAGT GGGCTGTTGC TGGTGCCAAG
ACTTTGGCTG CTGAAGGCAT TAAGGCTCGC GTTCTTTCCA TGCCATCTCT CGAATGGTTC
GAAGAGCAGG ACGAAGAGTA CAAGGAAGCA ATCTTGCCAA AGTCCGTCAA GGCTCGCGTT
TCCATCGAAG CTGGCTTGGC ATTGCCTTGG TACAAGTATC TTGGCGATTG CGGCAAGGCT
GTTTCTATCG AACAGTACGG CTTGCAGGGT GACGGCGGTC AGAACATGAT TGACTTGGGC
ATTACTGCTG AGCACGTAGT AGAAGCTGCT AAGGCTTCTA TCGAAGAAGC TCGCGCCTAA
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| Protein sequence | MTDFNWSALD ERAVKMAKVL SADAVERAGH GHPGSPVSLA PIAYTLYQHF IKHDPADPKW
AGRDRFILSG GHASLTQYVQ LFFSGYGLTL DDLKYFRGGA DTRTPGHPEY GLTPGIEMTT
GPLGQGLASA VGFAYGQRFE RGLLDPEAPA GTSPFDHKVW VICGEGDVEE GVSSEAASLA
GNQKLGNLTV IFDANHIQIE GDTKLTFSED ILARYRAYGW YTDEVSFIQP DGSYKEDVQA
LAAAIEKAQE VTDKPHFIKV NTLIAWPTPG KTNNEASHGS KLGEEAVKGL KELCGFDPEV
SFPIDEEALA HARKVAERGL AAHKAWDEAL AKWAAANPDK AALYERLKAG KLPEGFDKAI
DDLVAGFEVG SKVATRKASG AVLNAIAAVM PELWGGSADL GGSNNTNIKG ADSFGPSEDA
TRTWPNVSEY GRQLHFGVRE FAMGAITNGI LLGSDTRPFN GTFFQFSDYE RPAVRLAALM
EIPNLYVWTH DSVALGEDGP THQPIEHLAA FRAIPQLEVV RPADEYETAE AYRYFFEKKN
SYPTAMILTR QGVPTLAETA EKAREGVKHG AYVLVDCEGT PDVIIMATGS EVQWAVAGAK
TLAAEGIKAR VLSMPSLEWF EEQDEEYKEA ILPKSVKARV SIEAGLALPW YKYLGDCGKA
VSIEQYGLQG DGGQNMIDLG ITAEHVVEAA KASIEEARA
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