Gene HMPREF0424_0899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0899 
Symbolfmt 
ID8708902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp1024375 
End bp1025358 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content50% 
IMG OID646482997 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_003374113 
Protein GI283783359 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTAC CAATATTGTT TGCTGGAACT CCGGAAGTTG CGGTTCCGTC TCTTCGCGAG 
TTAACTAAAG ATAGTGAGCA TTTTGATGTT CGCGCTGTTC TTACGCGACC GGACGCTCCG
ACTGGTCGCG GTAGAAAGCT TGTGCCAAGC CCTGTGAAAC AGGCTGCTCT TGAGCTCGGC
TTGCCAGTGC TTGAGTCGGA TCCTAAAAAT GAAGATGTGT TTCTTGAACA GCTTGCGGCA
ACCGGTGCAA AAGCTGCAGC AGTTGTAGCA TACGGCAAGA TTTTGCGACA GAATGTTTTA
GACGCGTTGC CGCTCGGCTG GTATAATCTT CATTTTTCGC TTCTTCCGCA ATGGCGAGGT
GCAGCTCCTG TGCAGCGCGC AATTTGGGCT GGGGATGATA TTACAGGTGC TACGGTTTTT
CGCATTACGC GCGGCATGGA TTGTGGGCCT ATTTTGGCGC AGTTTACTAC AAAAATTGAG
TCTCACGAAA ATTCTGGCGA TCTTCTTGCA CGACTTGCAA ACGACGGCGC GCCGCTTCTT
GCAGCATCTC TTCGTGGCAT GGAAACTGGT GAAATTGTGC CGGTTGAGCA AGATCAAACT
CCTCAAGAAG TTGCGCAAAA AATCACTGTT GAAGATGCTC ATATTGATTT TCATGTGCCA
GCTTTTGCAG TCGATCGTCA AATTCGCGCT TGTACGCCAA ATCCGGGCGC GTGGTGCGAG
CTTCATGCGG ACGATGAACA TAATGCGGAT CCGATTACTT TGCATGTTTT ACGTGCAGTT
CCGGCAGATG CTAACGATCC GCATGGTGAG GAATTGATGA AGCTTGATCC TGGAAAATTG
CTTGCTGGCA AGAAGCAAGT TTGGGTTGGT ACTTTAAGCG GCGTACTTGA ACTTTTGGAA
GTAAAAGCGC AGGGAAAGAA AGCTATGAAA GCGGCAGACT GGGCGCGCGG AGCTAGGCTT
TCGGCAGCAG CTTACTGCGC ATAA
 
Protein sequence
MALPILFAGT PEVAVPSLRE LTKDSEHFDV RAVLTRPDAP TGRGRKLVPS PVKQAALELG 
LPVLESDPKN EDVFLEQLAA TGAKAAAVVA YGKILRQNVL DALPLGWYNL HFSLLPQWRG
AAPVQRAIWA GDDITGATVF RITRGMDCGP ILAQFTTKIE SHENSGDLLA RLANDGAPLL
AASLRGMETG EIVPVEQDQT PQEVAQKITV EDAHIDFHVP AFAVDRQIRA CTPNPGAWCE
LHADDEHNAD PITLHVLRAV PADANDPHGE ELMKLDPGKL LAGKKQVWVG TLSGVLELLE
VKAQGKKAMK AADWARGARL SAAAYCA