Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0899 |
Symbol | fmt |
ID | 8708902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1024375 |
End bp | 1025358 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 646482997 |
Product | methionyl-tRNA formyltransferase |
Protein accession | YP_003374113 |
Protein GI | 283783359 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0223] Methionyl-tRNA formyltransferase |
TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCATTAC CAATATTGTT TGCTGGAACT CCGGAAGTTG CGGTTCCGTC TCTTCGCGAG TTAACTAAAG ATAGTGAGCA TTTTGATGTT CGCGCTGTTC TTACGCGACC GGACGCTCCG ACTGGTCGCG GTAGAAAGCT TGTGCCAAGC CCTGTGAAAC AGGCTGCTCT TGAGCTCGGC TTGCCAGTGC TTGAGTCGGA TCCTAAAAAT GAAGATGTGT TTCTTGAACA GCTTGCGGCA ACCGGTGCAA AAGCTGCAGC AGTTGTAGCA TACGGCAAGA TTTTGCGACA GAATGTTTTA GACGCGTTGC CGCTCGGCTG GTATAATCTT CATTTTTCGC TTCTTCCGCA ATGGCGAGGT GCAGCTCCTG TGCAGCGCGC AATTTGGGCT GGGGATGATA TTACAGGTGC TACGGTTTTT CGCATTACGC GCGGCATGGA TTGTGGGCCT ATTTTGGCGC AGTTTACTAC AAAAATTGAG TCTCACGAAA ATTCTGGCGA TCTTCTTGCA CGACTTGCAA ACGACGGCGC GCCGCTTCTT GCAGCATCTC TTCGTGGCAT GGAAACTGGT GAAATTGTGC CGGTTGAGCA AGATCAAACT CCTCAAGAAG TTGCGCAAAA AATCACTGTT GAAGATGCTC ATATTGATTT TCATGTGCCA GCTTTTGCAG TCGATCGTCA AATTCGCGCT TGTACGCCAA ATCCGGGCGC GTGGTGCGAG CTTCATGCGG ACGATGAACA TAATGCGGAT CCGATTACTT TGCATGTTTT ACGTGCAGTT CCGGCAGATG CTAACGATCC GCATGGTGAG GAATTGATGA AGCTTGATCC TGGAAAATTG CTTGCTGGCA AGAAGCAAGT TTGGGTTGGT ACTTTAAGCG GCGTACTTGA ACTTTTGGAA GTAAAAGCGC AGGGAAAGAA AGCTATGAAA GCGGCAGACT GGGCGCGCGG AGCTAGGCTT TCGGCAGCAG CTTACTGCGC ATAA
|
Protein sequence | MALPILFAGT PEVAVPSLRE LTKDSEHFDV RAVLTRPDAP TGRGRKLVPS PVKQAALELG LPVLESDPKN EDVFLEQLAA TGAKAAAVVA YGKILRQNVL DALPLGWYNL HFSLLPQWRG AAPVQRAIWA GDDITGATVF RITRGMDCGP ILAQFTTKIE SHENSGDLLA RLANDGAPLL AASLRGMETG EIVPVEQDQT PQEVAQKITV EDAHIDFHVP AFAVDRQIRA CTPNPGAWCE LHADDEHNAD PITLHVLRAV PADANDPHGE ELMKLDPGKL LAGKKQVWVG TLSGVLELLE VKAQGKKAMK AADWARGARL SAAAYCA
|
| |