| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0894 |
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| Symbol | |
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| ID | 8708943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1016389 |
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| End bp | 1018539 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482993 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003374109 |
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| Protein GI | 283783355 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAAGATG CTCTTGCAAA GAAGGATCCT GCTGCTACTG CAGAAGAGAT TAAGAATGAT
CTTGACGCAG CCAAGCGCCA GAATGCGATT AACGAGCAGA ATGCTAAGAA TGCTGGTATT
GCCAAGCTTG ATGCTAAGAA GGCAGAACTT GATGCAGCAT ACAAGGCGTT GAATGATGAG
CAGAAAGCAA AAGCTAAAGA TAAGTATGAA GCTGCCACTA AGGCAATCGA TGATGCCAAG
AACACTGTTA ACAGTGCAAC AAAGCCTTCT GAAATCAAGG ATGCTGTTGA TGGCGTGAAA
ACTTCGTTTG ATGACGCAAA CAAGGCAATC GAAGATGCTA AGGGCAAGCG CGATATTTCT
CAGAACACAT ACGATGATCA GTCTGTACTT AATAAAGAAA AGGAAGATCA GAAGAAACGC
ATTCAAGATA GTGATCTTCC AGATGCTGAA AAGCAGAAGG CTATTGATGA CATCAATGAT
GCAAAGAAGA TTGGCGACCC AACTGCTATT GCTAATCGCG CTTTGAAGGC TAAGAAGATA
GAGGATGCTA AGAAGCAGAT TGCTGCGCTT GATCATTTGA ACAATGCGCA GAAGGAAGCT
TTCAAGAAGA TTATTGAAGA TACTGATGCT TCTGATCACA AGAACGCTGA CGGTACAACT
TCTGACGACA TCGACGACGC GCTTGCCAAT GCTACTGCAA CCGATACTGC CATGGCTCGT
CTTGAAAAGC TGAAAGAGAT CGCTGATAAG TTCGCTAAGG GCGACAAGTA TAAGGGTCTG
CAAGAAGGCA ATGAGCAAAA GAAAGCGTTT GACGATGCTG CTACTGCTGC TGGAGCCGTG
CTAGACAAAG CTAATGGCGA TCCTAAGGAT GCGGATCAGG TTAATGAGCT GTATAAGGAT
CTTCTTAAGG CAATGCAGGC GATTGATGAC AAAGTTAAGG GTGCGGGCGT AAGCACTGAT
TTACTTCAGG CTGAAGTAGA TAACGATTCT AAGCTTAAGC CAACGCCAGC TGATCCTAAC
GATTCCACTA AGCCGGCTAC ACCTGGCGAT CCTCTGTACA CGACCGCTTC TAAGGAGAAG
AAAGAAGCAT TTGACAAGGC ACTCTCTGAC GCGGAAGCGG CATTGAAGAA AGCTAAAGAA
GATAACGAAA ACGATAAGAA TCTAGACTCT ACTCCGCGCA CTCCCGAGCA AGAGGCTAAA
GATCAACAAG CGGTAGACGA CGCACTTCAG AAGCTTGAAA ATGCGCGTAA GGCGCTTGAT
GGTGTTGATA CCAAGCCGTT GCAAGATGAG ATTGATAAGG ATAGCAACGT TAAGAACTCA
GATAGGTATA CGTATTCTAC TACGACGGAA AAGAAGACTG CGTTTGATAA GGCTCTTCAA
GATGCTAAGG ATCTTATCGA TAAGCTAACT GGTACGAAGA AGGCTGCTGC AGGCGAGGAA
GATGTAACAA CTAAGACTCA AGCTGAAAAG CAGAAGCTTG TTGACGCTGC TCTTGCAAAG
CTTAAGGCAG CTGAAGAGGC TCTTGACGGT AAGAAACCAA CTCCTGGTTC TGGTTCTGAA
GCTGGTTATG GTGTGAATGA TAATGCGCCT ACTACTGTGG ATAAGGGTGA GTTGAATGTT
CAGATTCAGG GTGCTGAGTC TGATTCACAG CCTGGAAATG CTGGTAATGG TAACGCTGGT
GCTGGCGTAA ACTCGGGTAA TGCAGGTAAC GCTGCTAACA CCAATGCTGC CAACGCTAAC
GCTAATAATG CTAATGGCGC AAGTTCTGCT GCTGTGAACG CTGCTGTTGA GAATAATCCT
GCTGTGAAGC AGGCGGATGC TAAAGTTTCT AAGGCTCAGG CGGCTTTGGA TGCTGCTTTG
GCTGAGGCTA AGAAGGTTGC TGCTGATCCG AATGCTACCC AGGCTCAGGT TGATGCTGCG
GTTAAGAATC TTTCTGCTGC TCGTAAGGCT TTGGCTGCTG CTAAGGCTCA TGCGGCTGAT
GTTCGTGCTT CTGTGCGCGC TCAGGTGTTG AAGAGTGGTA GTGTTGCTCA GCTTAGTAAG
ACTGGTAGTG ACGTGTCTGT GTTTGGCTTG TTTGCTGCAA CTCTTAGTGC TGCTGGTGCT
GCGCTTTTCT CAGCTAAGCG TCGTGGTACT TCTCGTCACA GTAATAAGTA G
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| Protein sequence | MEDALAKKDP AATAEEIKND LDAAKRQNAI NEQNAKNAGI AKLDAKKAEL DAAYKALNDE
QKAKAKDKYE AATKAIDDAK NTVNSATKPS EIKDAVDGVK TSFDDANKAI EDAKGKRDIS
QNTYDDQSVL NKEKEDQKKR IQDSDLPDAE KQKAIDDIND AKKIGDPTAI ANRALKAKKI
EDAKKQIAAL DHLNNAQKEA FKKIIEDTDA SDHKNADGTT SDDIDDALAN ATATDTAMAR
LEKLKEIADK FAKGDKYKGL QEGNEQKKAF DDAATAAGAV LDKANGDPKD ADQVNELYKD
LLKAMQAIDD KVKGAGVSTD LLQAEVDNDS KLKPTPADPN DSTKPATPGD PLYTTASKEK
KEAFDKALSD AEAALKKAKE DNENDKNLDS TPRTPEQEAK DQQAVDDALQ KLENARKALD
GVDTKPLQDE IDKDSNVKNS DRYTYSTTTE KKTAFDKALQ DAKDLIDKLT GTKKAAAGEE
DVTTKTQAEK QKLVDAALAK LKAAEEALDG KKPTPGSGSE AGYGVNDNAP TTVDKGELNV
QIQGAESDSQ PGNAGNGNAG AGVNSGNAGN AANTNAANAN ANNANGASSA AVNAAVENNP
AVKQADAKVS KAQAALDAAL AEAKKVAADP NATQAQVDAA VKNLSAARKA LAAAKAHAAD
VRASVRAQVL KSGSVAQLSK TGSDVSVFGL FAATLSAAGA ALFSAKRRGT SRHSNK
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