Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0879 |
Symbol | clpP_2 |
ID | 8709903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 997635 |
End bp | 998246 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646482979 |
Product | Clp protease |
Protein accession | YP_003374095 |
Protein GI | 283783341 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTGAAC TTTTTACAGC TTCTCCCGTG ATGGAACAGG CTGAAGCACC TACATCAACT GATCCTATTT TTAATCGGTT GCTAAAAGAT CGAATTATTT GGTTGGGATC TGAAGTAAAA GATGAGAATG CTAATGTTAT TTGCGCGCAA ATGTTAATGC TTGCTGCGGA AGATCCTAAG AAGGATATTT GGTTGTATAT TAATTCGCCT GGAGGTTCAA TTACTGCTGG TATGGCAATT TACGATACTA TGCAATTAAT TGAGCCGGAT GTTGCGACTA TTGCTGTTGG AATGGCTGCA TCTATGGGCC AGTTCTTGCT TAGTTCTGGC ACTCCTGGTA AGCGTTATAT TACCTCACAT GCTCGTGTGC TTATGCATCA ACCTTCTGGC GGTGTCGGTG GCACTGCTAC GGATGTGCGA ATTAACGCAG AGCTTATTAT GGATATGAAA AAAACGCTTT CTGAATTGAC TGCAAAGCAG ACTGGTCATA CGGTAGAGGA AATTTACCGA GATAACGAAT ATGATCACTG GTTTACAGCT CAGCAAGCTT TGGAGTATGG TTTCGTAGAT AAGATTGTGA CCACTCCTGC TTCTATGCGC GGTGAGGAGT AA
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Protein sequence | MTELFTASPV MEQAEAPTST DPIFNRLLKD RIIWLGSEVK DENANVICAQ MLMLAAEDPK KDIWLYINSP GGSITAGMAI YDTMQLIEPD VATIAVGMAA SMGQFLLSSG TPGKRYITSH ARVLMHQPSG GVGGTATDVR INAELIMDMK KTLSELTAKQ TGHTVEEIYR DNEYDHWFTA QQALEYGFVD KIVTTPASMR GEE
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