| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0876 |
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| Symbol | |
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| ID | 8709740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 994984 |
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| End bp | 996636 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482976 |
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| Product | TnpX site-specific recombinase family protein |
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| Protein accession | YP_003374093 |
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| Protein GI | 283783339 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAC TAAATAGACA GCCTTCTTAT ACTCTAGATA ATGTAGGCAA GATAACGGCA
CTTTACTGCC GTTTATCCAA AGACGATGAA TTACAAGGTG ACAGCAATTC CATTATCAAT
CAAAAGAGCA TGCTGAAAAA GTATGCCGAG GATAATCATT TCAACAATCT TATGTTCTTT
GTAGACGATG GCTACTCGGG TACTAATTTC CAGCGACCTG ATTGGCTTAA ATTAACTGCT
CTCATTGACG AAGGAAAGAT TGGAACCATT ATCGTCAAGG ACATGTCACG CTTGGGTAGA
GATTATCTGC AAGTTGGTAT GTATACAGAG ATGGTATTCC CTAACGCTGA TATTCGCTTT
ATTGCAATAA ATAACGGCGT AGATAGCAAT AATCAGTCAG ACAACGACAT GACACCTTTC
ATCAACATCT TCAATGAGTT TTATGCTAAA GACACAAGCA GAAAAATAAA AGCTGTGTTT
AAAGCAAAAG GACAAAGTGG GAAGCCGCTC TGCATCAATC CTCCTTACGG ATATCTTAAG
GATCCTGAAG ATAAAAATCA TTGGATTGTA GATGAAGAAG CTGCCAGTGT AGTGCGTGAA
ATCTTTAGAC TCTGCGTTAA TGGGTATGGG CCTAGCCAGA TTGCCAATGA GCTAATCAAA
AGGAATATTC CAACACCTTC TGAGCATTTT TTCTCTCTTG GTATTAAAAT TCCTTCCGCG
AAATCGGAGA TTAAGGGAGT CTGGAATCAA AAAACTATCT CTAATATGCT TGAAAAGCAA
GAATATCTTG GGCATACGGT CAATTTCAAA ACAAGAAAGA AATCGTACAA GTGCAAGAAA
ACATTATTGA ATCCCAAAGA AGACTGGCTA ATTTTCAAAA ACACACACGA AGCAATTATT
GACCAGGAAA CTTTTGATAT TGTTCAACGT ATAAGAAATG GTAGACGAGT GCGTACCAAT
CTTGGAGAGA TGCCGGTGTT ATCGGGAATG CTATTTTGTG CGGATTGTGG TAACAAGCTT
TATCAGGTTC GAGGAAAAGG TTGGAGCCAT GATAAAGAAT ACTTTGTCTG TGCTACATAT
CGTAAGCAAA AAGGCAAATG CTCATCACAT CAAATTAGAA ATATTCAGAT CGAAGCAATA
CTGCTTCACG AGCTACGAAT GATTACTTCA TTTGCCAAAC AGCACGAAGA AGAGTTCGTG
GGACTTGTGA TGAAGAAAAG CGAGAAAGAA CTAACCCAAA AGTTAAAGTC CTCTAATAGG
GAACTCGAGC AAGCAAAAGC AAGAATTAGC AAACTTGACA CAATTGTTCA GCATCTCTAT
GAAGACAACT TAGACGGTAA AATTTCTGAT GAACGATTTA AGAGCATGTC TGAGTCCTAC
GACAAGGAAC AAGCTGAACT GAAAAGCAAG ATTGAATCCC TTGAAGCCTT TATTTCTAAA
GCGCAAGAGG AATGTCTCAA CGTGGATTCT TTCTTGAAAT TAGTACGACA ATACACAGAT
ATACAAGAAC TTAATGCAGA GATCATTCGA ACCTTTGTAG ATAAGATTTA TGTTGAAAAA
TCTGAAAAGG TAGCAGGTAC AAGAACCAAG AAACAAACCA TATGGATACA GTGGAATTAC
ATAGGTGCAG TTGATATTCC ACTCCATAAG TAA
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| Protein sequence | MNKLNRQPSY TLDNVGKITA LYCRLSKDDE LQGDSNSIIN QKSMLKKYAE DNHFNNLMFF
VDDGYSGTNF QRPDWLKLTA LIDEGKIGTI IVKDMSRLGR DYLQVGMYTE MVFPNADIRF
IAINNGVDSN NQSDNDMTPF INIFNEFYAK DTSRKIKAVF KAKGQSGKPL CINPPYGYLK
DPEDKNHWIV DEEAASVVRE IFRLCVNGYG PSQIANELIK RNIPTPSEHF FSLGIKIPSA
KSEIKGVWNQ KTISNMLEKQ EYLGHTVNFK TRKKSYKCKK TLLNPKEDWL IFKNTHEAII
DQETFDIVQR IRNGRRVRTN LGEMPVLSGM LFCADCGNKL YQVRGKGWSH DKEYFVCATY
RKQKGKCSSH QIRNIQIEAI LLHELRMITS FAKQHEEEFV GLVMKKSEKE LTQKLKSSNR
ELEQAKARIS KLDTIVQHLY EDNLDGKISD ERFKSMSESY DKEQAELKSK IESLEAFISK
AQEECLNVDS FLKLVRQYTD IQELNAEIIR TFVDKIYVEK SEKVAGTRTK KQTIWIQWNY
IGAVDIPLHK
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