Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0875 |
Symbol | |
ID | 8709352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 993779 |
End bp | 994726 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 646482975 |
Product | phage capsid family protein |
Protein accession | YP_003374092 |
Protein GI | 283783338 |
COG category | [R] General function prediction only |
COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAACA GAGATATTGA AAAAGAAATG AAACTAGCAA GTCAGGACTA CCACAACACG TTTTGGAACG TACTGCGCGA CGCAAATGGT AATGCGAACA ATATTGCAGG AAAACTGCGC CACATTCATA CAGGTGCCTA TGATTTGCCG ACTTCTTCTC TAGCAAAACT CGAAGCAAAA CTTGCAAACA AAAGTAATCT TAGAAAACTG TGTACAGTGG TAAAAGCACA CTCGCAATCA AGCAAATTGT TCATCTATGA AGGTACACCG TTCACTAAAT GGATGAAAGA TTATGATGCG AATATCATTA CGCATATGCC TATTAAAGAT GGCTTTAAGC GTATTGATGT AACGGATTAT ACCCTAGTTA ACCTTATTCG TTTGGGTACG GATTTTACAG CTGATCTTGA CTTTGATATC GAAGAGTTCA TCACAAGCGA ACTGACAAAG CAATTTACAT TGAGTGAGTC GGAAGCTTTT ATAAATGGCG ATGGGATAAC TAAGCCGACA GGAATTTTAT CAGATACATC AGGTGCTGAG GTTGCTGTGC AAGCAAAAGA GATTTCCGCA GATACCATCA AACATTTATT CTTCTCGCTA GATAGTAAGT ATCGAGAAAA TGCCACGTGG CTTATGAATG ATGAAACTGC TCTTTATCTT CAAACCTTAA AGGACACTAC CGGAGCATAC ATCCTACCTG ATTTTGATGG CAACTTAATG GGCAGACCTG TGGTCATTGA CAATGCCATG CCTTCTTCGC AAAAGGGAGC AAAAGTTATC GCCTTTGGTG ATTTTTCCAA CTATTGGATT ATCGAACGCC ATAACCCAAC CATCAAGGTT CTAAACGAAA TATTTTCTCT TATAGACCAG ATAGGTTACC TCTCTTTTGA GTATTTGGAT GGGAAACTGG TACATCCTGA AGCAATTAAA GTATTGCAAC TTTCTTAA
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Protein sequence | MINRDIEKEM KLASQDYHNT FWNVLRDANG NANNIAGKLR HIHTGAYDLP TSSLAKLEAK LANKSNLRKL CTVVKAHSQS SKLFIYEGTP FTKWMKDYDA NIITHMPIKD GFKRIDVTDY TLVNLIRLGT DFTADLDFDI EEFITSELTK QFTLSESEAF INGDGITKPT GILSDTSGAE VAVQAKEISA DTIKHLFFSL DSKYRENATW LMNDETALYL QTLKDTTGAY ILPDFDGNLM GRPVVIDNAM PSSQKGAKVI AFGDFSNYWI IERHNPTIKV LNEIFSLIDQ IGYLSFEYLD GKLVHPEAIK VLQLS
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