| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0873 |
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| Symbol | |
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| ID | 8709952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 988641 |
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| End bp | 990104 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482973 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374090 |
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| Protein GI | 283783336 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTAA TATTAAAAGC AAAAGACATT CGTGTGGAAT TCAAAGGACG CGATGTTTTA
GATATAAATG AATTAGAAGT ATATGATTAT GACCGTATTG GTTTAGTAGG AGCAAATGGT
GCTGGAAAAA GCACTTTACT CAGGGTACTT TTAGGAGAAT TAACTCCCCC AGGATGTAAA
ATGAATCGTC TGGGTGAACT TGCCTATATT CCCCAGTTGG ACGAAGTAAC TCTGCAGGAG
GAAAAAGATT TTGCACTTGT AGGCAAGCTA GGTGTTGAGC AATTAAATAT ACAGACTATG
AGCGGTGGTG AAGAAACAAG GCTTAAAATA GCACAGGCCT TATCGGCACA GGTTCATGGT
ATTTTAGCGG ATGAACCTAC GAGCCATTTA GACCGTGAAG GAATTGATTT TCTAATAGGA
CAGCTAAAAT ATTTTACAGG TGCACTGTTA GTTATTAGCC ATGACCGCTA TTTTCTTGAT
GAAATAGTAG ATAAAATATG GGAACTGAAA GATGGCAAAA TCACTGAGTA TTGGGGAAAC
TATTCTGATT ATCTTCGTCA GAAAGAGGAA GAACGTAAGA GCCAAGCTGC AGAATACGAA
CAATTTATTG CGGAACGTGC CCGATTGGAA AGGGCTGCGG AGGAAAAGCG AAAACAGGCT
CGTAAAATAG AACAGAAGGC AAAAGGTTCT TCAAAGAAAA AAAGTACTGA AGACGGAGGG
CGTTTAGCTC ATCAAAAATC AATAGGAAGT AAGGAAAAAA AGATGTATAA TGCTGCTAAA
ACCCTAGAGC ACAGGATTGC GGCCTTAGGA AAAGTAGAAG CTCCGGAAGG CATTCGCAGA
ATTCGTTTCA GGCAAAGTAA AGCATTGGAG CTCCATAATC CATACCCTAT AGTCGGTGCA
GAAATTAATA AAGTATTTGG GGATAAGGCT CTGTTTGAAA ATGCATCTTT TCAAATTCCG
TTAGGAGCAA AAGTGGCGTT AACTGGTGGT AATGGAATCG GAAAAACAAC TTTAATCCAA
ATGATCTTAA ACCATGAAGA AGGAATTTCT ATTTCGCCTA AGGCAAAAAT AGGTTACTTT
GCACAGAATG GTTACAAGTA CAACAGTAAT CAGAATGTTA TGGAGTTTAT GCAGAAGGAT
TGTGACTACA ATATATCAGA AATTCGTTCA GTGCTAGCAT CTATGGGGTT CAAACAGAAC
GATATTGGAA AAAGTTTATC TGTTTTAAGC GGTGGAGAAA TTATAAAATT GTTGCTTGCT
AAAATGCTCA TGGGTAGATA TAACATCCTA ATAATGGATG AACCCAGTAA CTTCCTTGAC
ATACCAAGTT TAGAGGCTTT GGAAATACTA ATGAAGGAGT ACACCGGAAC TATCGTGTTT
ATCACCCACG ATAAACGATT ACTCGAAAAT GTAGCAGATG TAGTTTATGA AATTAGAGAT
AAGAAAATAA ATCTGAAACA TTAA
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| Protein sequence | MELILKAKDI RVEFKGRDVL DINELEVYDY DRIGLVGANG AGKSTLLRVL LGELTPPGCK
MNRLGELAYI PQLDEVTLQE EKDFALVGKL GVEQLNIQTM SGGEETRLKI AQALSAQVHG
ILADEPTSHL DREGIDFLIG QLKYFTGALL VISHDRYFLD EIVDKIWELK DGKITEYWGN
YSDYLRQKEE ERKSQAAEYE QFIAERARLE RAAEEKRKQA RKIEQKAKGS SKKKSTEDGG
RLAHQKSIGS KEKKMYNAAK TLEHRIAALG KVEAPEGIRR IRFRQSKALE LHNPYPIVGA
EINKVFGDKA LFENASFQIP LGAKVALTGG NGIGKTTLIQ MILNHEEGIS ISPKAKIGYF
AQNGYKYNSN QNVMEFMQKD CDYNISEIRS VLASMGFKQN DIGKSLSVLS GGEIIKLLLA
KMLMGRYNIL IMDEPSNFLD IPSLEALEIL MKEYTGTIVF ITHDKRLLEN VADVVYEIRD
KKINLKH
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