Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0868 |
Symbol | |
ID | 8709400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 980815 |
End bp | 981615 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646482968 |
Product | conserved hypothetical protein TIGR00730 |
Protein accession | YP_003374085 |
Protein GI | 283783331 |
COG category | [R] General function prediction only |
COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
TIGRFAM ID | [TIGR00725] conserved hypothetical protein, DprA/Smf-related, family 1 [TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAATA GTAAAGATTT TTCAGTAGAT GTTCCACCTT GGAATAACAC GTATCATCGT GGTTCTGTTG TAATGCGCGG TTCTATGATT CCTAAGGAGA GCACTACAGA AACGCTTCTT CGTAACGATA ACAATCAGCA GCTTGTTTCT GGAGTTGGTG TAGAAGTAGA TAAGAAATGG GATTGGCGTA GCGCGGATCC GTGGCGTGCG CTTCGTATTC AAGCTGAGTT TGTTGATGGT TTTGACGCGC TCGCATCGTT AGGTAAAGCT GTTAGTATTT TTGGTTCTGC TCGAATAAAA GAAGATGATC CTGAGTATTC TTTAGCTCGT ACTATGGGTT CAGAGCTTGC AAAACGTGGT TTTGCTGTTA TTACAGGTGG CGGTCCTGGA ATTATGGAAG CTGCAAACCG TGGAGCTGCA GAAGCTGGTG GTACGTCTGT AGGATTGGGG ATTGAGCTTC CTCATGAGCA GGGTTTGAAT AAGTGGATTA ATCTTGGCAT GCAATTTCGG TATTTTTTCG TGCGTAAAAC AATGTTTATG AAGTATTCTT CTGGAATTAT TGTGTGCCCT GGCGGTTTTG GCACGATGGA TGAAATGTTT GAAGCTTTGA CTCTAGTGCA AACGCATAAA GTTGCGCGCG TGCCTGTTGT TCTTTTCGGT ACTTCGTATT GGAATGGTTT GATTGACTGG CTGAAGTCTA CAGTAATTCA ACGAGGTTTT ATTTCTTCAT TAGATCCGCA CTTATTTGCT GTCACAGACG ACCCAATAGA GGCGGTGCGA ATAGCATCTG GAATTGAATA A
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Protein sequence | MSNSKDFSVD VPPWNNTYHR GSVVMRGSMI PKESTTETLL RNDNNQQLVS GVGVEVDKKW DWRSADPWRA LRIQAEFVDG FDALASLGKA VSIFGSARIK EDDPEYSLAR TMGSELAKRG FAVITGGGPG IMEAANRGAA EAGGTSVGLG IELPHEQGLN KWINLGMQFR YFFVRKTMFM KYSSGIIVCP GGFGTMDEMF EALTLVQTHK VARVPVVLFG TSYWNGLIDW LKSTVIQRGF ISSLDPHLFA VTDDPIEAVR IASGIE
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