| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0867 |
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| Symbol | |
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| ID | 8709980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 979737 |
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| End bp | 980813 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482967 |
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| Product | putative succinate dehydrogenase iron-sulfur subunit |
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| Protein accession | YP_003374084 |
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| Protein GI | 283783330 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
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| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAATG AGCTTGGTGA TAACACTGCG CTTGTTACTT TGCGTATTTC ACGCTTTACT
CCATTTAATA AATCTGAAGA TGATTCAAAC AGTAAACAGA CAGGGCGCAA GCGCAGAGAA
AGTCCTTTTG CACGTAGAAA GCGCAGTAAT CCTTTCGCAA AACTAGATTC TTCAGAAAAT
AACATAAATA ATTCTTCCGA ATCTAGTGAA TCCAGTGAAT CTTCCGGATC TTACGAATCT
TCTCCAAAAC GAATTCAAGG TAAGCATTGG GTTCAAGATT ACAGTTTACG CGTTCATTCT
ACTGACACTA TTCTTGACTG TTTACTAGCT ATTAAACGCA CAATCGACCC AACTTTAGCT
TTCCGCTACT CGTGCGGTCA CGGCGTTTGC GGTTCTGACG CTGCAAACGT AAATGGCATG
CCAACCTTAC TATGCAGTGC AACTATTGGC GCAAACGCAC GTCCTGAAAG CACAAATAGC
GTGCAATCTC GAGGCTTTAG AAAAACTGGC ACTACTAGCA GCTCCGCACA GTCGACAAAA
TCGCCAACTT TACAGCAAAA ATCTAAAGAA ACTACCACTT TGCAAAATGG CACTTTTGGT
GTTATTGAAC TTGCTCCACT TTCAGGATTT GCAGTTCAGC GAGATCTTAT TTGCGATATT
TCGCCTATGA TTTCGCAAAT AAAACGCTTA GAACCTTATT TGCAAGCATC TAACGTTTCT
ACGAGAAATA CTGAAGGGAA ACTCCAGCTT ATTGAGTTTT TGCAACATCC TGAGGAACTT
AAAAAATTTG AGCTTTTGAG CAATTGCATT ATGTGCGGTG CTTGCGAAGG AATTTGCCCA
ATTTATGCAG GCGGAGAAGC CTTTATTGGA CCTGCAGCAT TGGTTAACGC GGCTCGTTTT
ATTTATGATT CCAGAGACAA CGCAACAGAG CATCGCCTTG ATCTAATAGA CAGCAGCGAC
GGTATTAGCG CATGCCAGTC AGTTAGAGCA TGTTCAAGAC AGTGCCCTCG CGGAATTGAT
ATTGGCGAAG AAATTTGGCA GCTTACAACG CTTGTAAACG AGCGCAAGAA CTCTTAG
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| Protein sequence | MSNELGDNTA LVTLRISRFT PFNKSEDDSN SKQTGRKRRE SPFARRKRSN PFAKLDSSEN
NINNSSESSE SSESSGSYES SPKRIQGKHW VQDYSLRVHS TDTILDCLLA IKRTIDPTLA
FRYSCGHGVC GSDAANVNGM PTLLCSATIG ANARPESTNS VQSRGFRKTG TTSSSAQSTK
SPTLQQKSKE TTTLQNGTFG VIELAPLSGF AVQRDLICDI SPMISQIKRL EPYLQASNVS
TRNTEGKLQL IEFLQHPEEL KKFELLSNCI MCGACEGICP IYAGGEAFIG PAALVNAARF
IYDSRDNATE HRLDLIDSSD GISACQSVRA CSRQCPRGID IGEEIWQLTT LVNERKNS
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