| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0866 |
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| Symbol | |
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| ID | 8708804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 978845 |
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| End bp | 979642 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482966 |
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| Product | RNA methyltransferase, RsmE family |
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| Protein accession | YP_003374083 |
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| Protein GI | 283783329 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACG CTTTATTTTT GCTTGATACT GATCACGATA ATGCTCCTGT GCTTGCAGAA
GGAATCGAAG AAGGGTGGAC GATTACGCTT CCATCGCAAG TAAAACGTCA CGCTATATCT
GCCATGCGAC TATTAGAAGG CGATGCTTTG CAACTTTCTG ACGGCAAAGG CTTGCGCATT
CATGCAAAGG TGACGGATGT TGAAAATGGC TTAGTTCGTG TAGAAGCGTT TACTAGGGAA
GCTCCGCGAA TGACTAGACT TGCACTTGTT CAAGCTTTGG CAAAAACAGG GCACGATGAG
CAAGCAATTG ATATGGCTAC GCAAATTGGC GTGGATGAAG TAATCCCTTG GTGCGCGGAT
CGTTCAATTG CAAAGTGGAA ACCTGGTCGC ACAGATAAGC GTTGGAGCCA AGTTTTACAG
TCTGCTACAG AGCAATCTCG TCGCGCATGG ATGCCTGAAC TTCAAGAATG TGTTTCAAGC
AAGCAAATAG TGGCAATATG TAGGCGTGCG TGCGTTTACG GAAATCTCGT AATTGTATTG
CATCAAGACG CAACTGATTG CTGGAATCAA ATAGAACAAG CAGTAAATAC TCTTAGCGAG
CGCTGTTTGG AGGATGGTAA AGAGCGCACT GTTTACGTTT TAGTTGGGCC AGAAGGTGGT
ATTAGTGATG ACGAAGTGTC AATGTTTATT GATGCTGGTG CTAAAAGCTG CGTTTTAGGC
AGTAATATTC TTCGCGCATC TACTGCAGGA CCTGTAGCTC TTTCTCTTCT TTCGCGCGCT
TTAGGACGTT ACGAATAA
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| Protein sequence | MTDALFLLDT DHDNAPVLAE GIEEGWTITL PSQVKRHAIS AMRLLEGDAL QLSDGKGLRI
HAKVTDVENG LVRVEAFTRE APRMTRLALV QALAKTGHDE QAIDMATQIG VDEVIPWCAD
RSIAKWKPGR TDKRWSQVLQ SATEQSRRAW MPELQECVSS KQIVAICRRA CVYGNLVIVL
HQDATDCWNQ IEQAVNTLSE RCLEDGKERT VYVLVGPEGG ISDDEVSMFI DAGAKSCVLG
SNILRASTAG PVALSLLSRA LGRYE
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