Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0860 |
Symbol | |
ID | 8709848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 971776 |
End bp | 973824 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646482960 |
Product | AMP-binding enzyme |
Protein accession | YP_003374077 |
Protein GI | 283783323 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCGTTT TTAATGCACT CCAACAGCAA GCGTTTAATC TTGCCCGTAA AGCATTGCGT ATTGGCAGTA ACTTCGCGCA CCCAGTCAGC GATGACCGTG CAGGCGAACC AGACTACCTT AATACGGATC AAGAAAACAC AAATACTTTA CTTTCACAAA AGCAACGCCT TCCACACGTA GAAGAGTGGG GCGCGCAAAT GCCAACAACG ACGTTTATCG ATCCGGAAAC AGGCTTGCTG ACCACAAAAA CCGAAAGCGC AGCACCTCTT GACGAAGGCA CAAGCATTTA TGACTTATAT GCAGATCGCG CAGCACGTAT GGGTGACGAT CCGCTTTACA CTTATAAAGA AAACGATAAG TGGGTCACAA AAACAGCTAA TCAGTTCCTT CAAGAAGTAC GCGATGCTGC AAAAGGTTTG ATGCACTACG GATTGCGCAA AGGCGACGCC GTTGCCCTTA TGTGCAAAAC ATCATATGAG TGGGACGTCA CCGACGCAGC AGTTATGGCT TGTGGTGGTG TTCTTGCAAC TATTTATGAC ACGGATTCAG CTGAGCAAAT TCGCAATATT GTGAATAATT CCGACTCGCG TTTCCTTATT GTTGAAACAA CTGACATGCG AGATAAAGCT GATGGAGCTA TTGAAGAATG CCCAAGCTTG GAACGCATTA TTTGCATTGA AACAGGCGGT TTAGCAGAAC TTCAAGCTTT CGGATACGCT GTTAGCGATG AGGAACTAGA TGCTCGCATT GATTCTGTAA AGAAAACAGA CTTGTGCTCT ATTGTTTACA CTTCTGGTTC CACAGCTGCA CCTAAAGGCG TGGAAATGAC TCACGAACAC TATTGCACTA CAGCGTTGAA TTTGCCTGTT TACTTGCCAA ATTTGCTTAG CGAAAAAGAC GGTTCTGTGC TTTTGTTCCT TCCTCAAGCA CACTCTTTTG CAAGAGCAAT TAACTATATT GTTGTTGCAA GTACGTTGCG CATTTATATT GCTCAAGGTA TTCCTACTTT GATTTCTGAT TTGCAAGTTG CAAAACCTAC GGTTATGATC GTTGTCCCTC GAGTTCTTGA GAAGGTTTAT AACGCAGCTT CGCAGAAGGC TGGTCACGGT GCTAAAGGCT TGGCTTTCCA GGGTGCTGTT GTGACGGCTC AACAGTATAT GAAGGAAGTT CAGGAATTTG GTGATGCTAA AGCTCTTACT AAAGCTCGCC GCACTGCTTA CGATCCGCTT GTTTATCGTC CACTTCGTCA AGCTCTTGGC GGTCGCGCAC GCTGGATTGT TGCAGGTGGA GCTCCTCTAG ATCCTGAATT GCTTTCATTC TTCCGCGGAG CAGGAGTTCC TGTCTACGAA GGTTATGGTC TTACAGAAAC TACTGCACCA TGCGCGTTTA CTCCTATTGG AGTTCCATTC CGAGAAGGTT CTGTTGGCAT CGCATTCCCA GCTTTTACTT TGCGAATCGC ATCCGACGGC GAAGTTCAAA TTAAAGGCAC TTGCGTATTC CATAAGTATC ACAAAAACGA TGAAGCAACA GAAACTTCAT TTACTAAAGA CGGATGGTAT GCAACAGGCG ATTTGGGACG AATTGACGAC GATGGCATGC TTTATATTAC CGGACGTAAG AAGGATTTGA TTATTACTGC TGGCGGTAAG AATGTTGCTC CTGGACCTAT TGAAGAGATG ATTAAGAGAT GCGAACTTGT GTCTCAAGCT CTCGTTCTTG GAGATAAGCG TCCGTTTATT TCTGCACTTG TTACTTTAGA CGAAGAAACT TTACGAAATT GGCTTAAACT CAAGGGTCTT GACGCCACTA TGAGCATGGA AGAGGCTGCT AATAATGCTG TTGTTCGTGC TGAAGTGCAA AAATTTATAG ATCTTGCCAA TGAAGGCGTG TCACGCGCAG AATCTGTGCG AAAGTTCATT ATTTTGCCAG AAGAGTTTAC GCAAGAAAAC GGCTTAATGA CTGCGTCTAT GAAGATTATT CGTCCACGAG TTATTAAGCG TTACACTACT TTACTTAATA CACAAATGTA TACGACGCGC AAAAAGTAG
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Protein sequence | MSVFNALQQQ AFNLARKALR IGSNFAHPVS DDRAGEPDYL NTDQENTNTL LSQKQRLPHV EEWGAQMPTT TFIDPETGLL TTKTESAAPL DEGTSIYDLY ADRAARMGDD PLYTYKENDK WVTKTANQFL QEVRDAAKGL MHYGLRKGDA VALMCKTSYE WDVTDAAVMA CGGVLATIYD TDSAEQIRNI VNNSDSRFLI VETTDMRDKA DGAIEECPSL ERIICIETGG LAELQAFGYA VSDEELDARI DSVKKTDLCS IVYTSGSTAA PKGVEMTHEH YCTTALNLPV YLPNLLSEKD GSVLLFLPQA HSFARAINYI VVASTLRIYI AQGIPTLISD LQVAKPTVMI VVPRVLEKVY NAASQKAGHG AKGLAFQGAV VTAQQYMKEV QEFGDAKALT KARRTAYDPL VYRPLRQALG GRARWIVAGG APLDPELLSF FRGAGVPVYE GYGLTETTAP CAFTPIGVPF REGSVGIAFP AFTLRIASDG EVQIKGTCVF HKYHKNDEAT ETSFTKDGWY ATGDLGRIDD DGMLYITGRK KDLIITAGGK NVAPGPIEEM IKRCELVSQA LVLGDKRPFI SALVTLDEET LRNWLKLKGL DATMSMEEAA NNAVVRAEVQ KFIDLANEGV SRAESVRKFI ILPEEFTQEN GLMTASMKII RPRVIKRYTT LLNTQMYTTR KK
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