Gene HMPREF0424_0853 details

Gene Information

• Locus tag: HMPREF0424_0853
• Symbol: lepA
• ID: 8709119
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 964359
• End bp: 966239
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 646482953
• Product: GTP-binding protein LepA
• Protein accession: YP_003374070
• Protein GI: 283783316
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0481] Membrane GTPase LepA
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01393] GTP-binding protein LepA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGATTACAC CGCATAACCA GCCAGGATTT ACGGATCAAT CGTTGATACG CAATTTCTGC 
ATTATTGCGC ATATCGATCA CGGCAAGTCT ACTGTAGCTG ACCGCATTTT ACAACTTTCA 
GGAATCGTGC CAGAGCGTGA AATGCGAGAC CGTTTCTTGG ATCGCATGGA TATTGAGCAA 
GAGCGCGGTA TTACTATTAA ATCTCAGGCT GTTCGAGTGC CGTGGACTTT TGAAGGCAAA 
GAGTATTCGC TTGGCATGAT TGATACTCCT GGTCACGTCG ATTTTACTTA CGAGGTTTCA 
CGCGCGCTGG CAGCATGCGA AGGTGCGGTG CTGCTTGTTG ACGCAACTCA GGGCATTGAA 
GCGCAAACGC TTTCTAATCT TTATATGGCA ATCGACCACA ATTTGACGAT TATTCCTGTG 
CTTAACAAAA TCGACTTGCC AAGCGCAGAG CCAGACAAGC ATGCTGAAGA AATAGCTGGA 
TTAATTGGTT GCAAGCCGGA GGACGTGTTG CGCGTTTCTG GTAAAACCGG CGAAGGTGTT 
AAAGACTTAC TTGATCAAAT TGTGCTGGAA GTTCCAGCCC CAAGCGGAAA TCCTGATTCT 
CCTGCTCGCG CGCTCATTTT TGATTCAGTA TATGATTCGT ATCGCGGAAT TGTCACCTAT 
ATTCGTATGG TTGATGGCGA ACTTAAGTCG CGCGAAAAAT TGCATATGAT GGGAATCGGC 
ATGACGCACG ATCCTATTGA AATCGGCGTT ATTAGCCCAG ATATGACTCC AACAAAGGCG 
CTTGGAGCTG GGGAAGTAGG TTACGTAATT ACAGGCGCAA AAGACGTGAG TCAATCTAAA 
GTCGGCGACA CTATTACTAG CGCCGTAAAT CCTGCATCTG AGCCTTTGGA TGGCTACCGC 
GACCCTAAAC CTATGGTTTA CGCAGGTCTT TTCCCAATTG ATAACGCTCA ATTCCCAGAT 
CTTCGAGATG CTCTCGACAA GCTAAAACTT AATGATGCAG CTCTTATTTA CGAGCCAGAA 
ACGTCTGTTG CGTTGGGCTT TGGTTTCCGT TGTGGATTCT TAGGTCTTCT ACACATGGAG 
ATTGTTTCAG AGCGCTTAAG CCGCGAGTTT GGCTTGGATC TTATTTCCAC TGCTCCTAAC 
GTAACTTATG ACGTCACTAG CGAAGATGGT AAAGAACATC ACGTAACAAA TCCTAGCGAG 
TTTCCAGAAG GCAAGATTAA GCGCATTATT GAGCCAATGG TTGCTGCAGA TATTATTACG 
CCGAAAGAAT TTATCGGTGC TGTAATGGAT TTGTGCCAGG ATCATCGCGG AGAAATGGGC 
ACAATGGAAT ACATTAGTGC AGACCGCGTG GAAATGCATT ACAGGATTCC TCTTGCAGAA 
ATCGTTTTTG ACTTCTTTGA TCAGCTTAAA AGCCGCACAA AAGGCTATGC TTCTCTTGAC 
TACCACGAAG ATGGCGAGCA AGCTGCCGAT TTAGTGAAAG TTGATATTCT TATTCAGGGA 
GATAAGGTTG ACGCTTTTAG TGCGATTGTG CACCGAGATA AGGCTTATTC TTACGGCGTT 
ATGATGACTA AGAAGCTTCG TGGACTTATT CCTCGTCAGC AGTTTGAAAT TCCAATTCAG 
GCTGCAATTG GCTCTAGAAT TATTGCTCGT GAAACTATTA GCGCTCTTCG AAAAGACGTG 
CTCGCTAAAT GCTACGGCGG CGATATTACG CGTAAACGTA AGCTTCTTGA AAAGCAGAAG 
GCTGGTAAGA AGCGCATGAA GATGCTCGGA CATGTTGAAG TTCCGCAGGA AGCATTCGTT 
GCGGCTTTGG CTACAGACGA GAGCGCAAAC GATCGCGATA CTAAAGATAA GATTCGCGCA 
GCGCAAAAGT CTGAAGGATG A 

 

Protein sequence

MITPHNQPGF TDQSLIRNFC IIAHIDHGKS TVADRILQLS GIVPEREMRD RFLDRMDIEQ 
ERGITIKSQA VRVPWTFEGK EYSLGMIDTP GHVDFTYEVS RALAACEGAV LLVDATQGIE 
AQTLSNLYMA IDHNLTIIPV LNKIDLPSAE PDKHAEEIAG LIGCKPEDVL RVSGKTGEGV 
KDLLDQIVLE VPAPSGNPDS PARALIFDSV YDSYRGIVTY IRMVDGELKS REKLHMMGIG 
MTHDPIEIGV ISPDMTPTKA LGAGEVGYVI TGAKDVSQSK VGDTITSAVN PASEPLDGYR 
DPKPMVYAGL FPIDNAQFPD LRDALDKLKL NDAALIYEPE TSVALGFGFR CGFLGLLHME 
IVSERLSREF GLDLISTAPN VTYDVTSEDG KEHHVTNPSE FPEGKIKRII EPMVAADIIT 
PKEFIGAVMD LCQDHRGEMG TMEYISADRV EMHYRIPLAE IVFDFFDQLK SRTKGYASLD 
YHEDGEQAAD LVKVDILIQG DKVDAFSAIV HRDKAYSYGV MMTKKLRGLI PRQQFEIPIQ 
AAIGSRIIAR ETISALRKDV LAKCYGGDIT RKRKLLEKQK AGKKRMKMLG HVEVPQEAFV 
AALATDESAN DRDTKDKIRA AQKSEG