| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0848 |
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| Symbol | |
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| ID | 8708890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 959900 |
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| End bp | 960550 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482948 |
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| Product | HAD hydrolase, family IA, variant 3 |
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| Protein accession | YP_003374065 |
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| Protein GI | 283783311 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR02247] Epoxide hydrolase N-terminal domain-like phosphatase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTAACG CACAAAATAT TGAGATCCAT GACGTCATGT TTGATTATTG CAGAGTTCTA
CTCGAATGGA ATTGCCGAAA CTGTTTGCAA AACCAGTTCC CGAATTTAGT TGATACTATT
TGCCCTAATG GAAGCTTTGG AAAGAACGAT TTAGCCGGGT TCTATGAATT TGAGGACCGC
ATGGATGGCG GCGAGCTTTT GAAAGATCTT ATGCCTGAAT ACGAACGTCG CTTTGGAAGC
GAACTTGCTG AAGCTTTCCG TTGGTATTGC GCTCATTATG ACCAAGTTTT GACACGAATG
ATGCCTGGAA TGGTTGATTT ATTGCATGAT TTACGTAAAG CTGGATACGG CGTATGGGGC
TTAACAAATT GGTCTAAAGA AACTTTCCCA CTTGCGTTAC GCAAATTCCC AGAACTTTCT
ACTCTTTTGC AAGGAACTAT TATTTCCGGT GTTGAGCATT TGCATAAGCC AGAACCGGAA
ATTTTTGAAC TTGCTATAAG TAGATTTGGA TTAAATCCGC AAACAACTGT TTTCTTCGAC
GATAAGCCAG CAAATATTGA TGGAGCTCAT AGAGTTGGCA TGCATGGATT TGTTTTTACA
ACTGCAGAGC AAGCGCGTAA GGATTTAGCT TCAATAGGAG TAAATCTTTA A
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| Protein sequence | MTNAQNIEIH DVMFDYCRVL LEWNCRNCLQ NQFPNLVDTI CPNGSFGKND LAGFYEFEDR
MDGGELLKDL MPEYERRFGS ELAEAFRWYC AHYDQVLTRM MPGMVDLLHD LRKAGYGVWG
LTNWSKETFP LALRKFPELS TLLQGTIISG VEHLHKPEPE IFELAISRFG LNPQTTVFFD
DKPANIDGAH RVGMHGFVFT TAEQARKDLA SIGVNL
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