| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0847 |
|---|
| Symbol | |
|---|
| ID | 8709462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 958650 |
|---|
| End bp | 959801 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 646482947 |
|---|
| Product | YjeF domain protein |
|---|
| Protein accession | YP_003374064 |
|---|
| Protein GI | 283783310 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCTTAA TGACGATTAC ACTTAATACT ATGTTTGGCA ATACAGATGG TATGAATTAC
ATTGCAAAAC CTGACAGTTC GCACACTGAC GCTAAAAACT CTGCAAATAA TGAAATATCA
GTAGATATTC ATCTTGCTTC CACACCATTG CGCACGCCTC ATGCAAGCGA TAATAAATAT
TCAAGAGGCG TTCTAGGCGT AATTACCGGT TCAAACGACT ATCCCGGAGC AGCAGTGTTA
AGCACAAGCG CTGCAATACA TGCAAATATT GGAATGGTCC GTTATTCAGG TCCTCTTCGT
GCACAAAATT TAGTATTGCA AGCATCCCCT GAAGTAGTAG CATACGAACA ATTAAACGGA
AAAATCGACG CAATAACAGT TGGATGCGGC ATACCAGACG AAAGCCATTG CAACGACGAA
ACGGCTTTAT CTCAAAGAAA ATACATTGCT AGCATACTTG CAAAATACTC CAACGAAAAC
GAAAACGACA ACAAAAACGA CAACAAAAAC GACAACGCTG AAACGCAATT AAATAACAAT
CTTCCGCCAA TATGCGTAGA TGCTGGAGCA TTAGACTTAC TACCAAAACA AGTTTGCGAA
AAAGTAGTTC TCACACCTCA CGCAGGAGAA TTAAGCTCGC TTTTTACTAG ATACGATTTA
GAAGTAAGCG CACAACAAAT AGCCAGCAAC CCAACACACT ACGCTCAAAA AGCAGCCGAT
CTTACTGGAG CAACTGTGTT AGTTAAAGGC GCAACAACAG CAGTTGCATC ACCATCAAAA
TTGCACTCTC CTATTTATAT TGCACAATAC GCTCCATCCT GGCTAGCAAC TGCAGGCTCA
GGAGATGTGC TAGCAGGAAT TTTAGGAGCA TTGCTGGCTC AGCACGAAAA AGATAACGAA
AACAACGCGA ACAACAACGA GAAAAACAAT GCGAACAACA AAAATTACGC ACTTATTGCA
GCGAGCGCAG CTGTGATTCA TGGAGTTTGC GCAGTATTTG CGTCACGCAG TAGCGGAGGA
AACAATTACA CTCAACTAGT GCAAGACATA GTGAAATCAA AGCGTGCTTT AACTTTGGAA
CATCCAATTG TGGCAAGCGA CATTATAAAT GCATTACCGC ATGTTCTTGG GATTCTTATT
AATATAAAGT AG
|
|---|
| Protein sequence | MCLMTITLNT MFGNTDGMNY IAKPDSSHTD AKNSANNEIS VDIHLASTPL RTPHASDNKY
SRGVLGVITG SNDYPGAAVL STSAAIHANI GMVRYSGPLR AQNLVLQASP EVVAYEQLNG
KIDAITVGCG IPDESHCNDE TALSQRKYIA SILAKYSNEN ENDNKNDNKN DNAETQLNNN
LPPICVDAGA LDLLPKQVCE KVVLTPHAGE LSSLFTRYDL EVSAQQIASN PTHYAQKAAD
LTGATVLVKG ATTAVASPSK LHSPIYIAQY APSWLATAGS GDVLAGILGA LLAQHEKDNE
NNANNNEKNN ANNKNYALIA ASAAVIHGVC AVFASRSSGG NNYTQLVQDI VKSKRALTLE
HPIVASDIIN ALPHVLGILI NIK
|
|---|
| |