Gene HMPREF0424_0841 details

Gene Information

• Locus tag: HMPREF0424_0841
• Symbol: thrS
• ID: 8709080
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 952059
• End bp: 954089
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 646482941
• Product: threonine--tRNA ligase
• Protein accession: YP_003374058
• Protein GI: 283783304
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTGAAA ATACCATCTC CATCACCGTA AACGAGGAAC GCAAGGAGGT GGATGCAAGC 
TTCACTGGCG CCCAACTTTT CGCGGAAGAT AAGAATATTA TTGCTGTGCG TTTAAATGGC 
GAGTTGCGTG ATTTGTACAC GTCTCTTCAT GACGGCGATA CCGTGGAATC AGTGGCCCTT 
GATAGTGAAG ATGGCATCGC AATCATGCGT CATTCCGCTA CTCACGTGAT GGCTCAAGCT 
GTTCAAGAAA TTCGACCAGA CGCAAAGTTG GGCGTAGGTC CTGTAATTAA AGACGGCTTC 
TACTACGATT TCGATGTTGA TACTCCATTT ACGCCAGACG ATTTGAAGCA AATCGAAAAG 
CATATGCAGC ACATTATTAA AGAGTCTCAA AGCTTCCGTC GTCGCGTTGT AACAGAGGAC 
GAAGCGCGCG AAGAAGAAGC AAATCAACCT TATAAGTTGG AGTTGATTGG GGATAAGGAA 
GCAGCTCTTG ATCCTGCTGC CTCTGGCGAA ATCAGCAAAC ATGAGCTTAG CATGTACGAC 
AATGTAGATC GCGAAGGAAA CAAGGTTTGG AGCGATTTGT GCCGCGGACC TCACCTTCCA 
AACACGCGTT ACATTAAGGC TTTTAAGCTT GAGCGTGTGG CTGCAGCTTA CTGGCGTGGC 
TCGGAGCAGA ATCCTATGCT TCAGCGCATT TACGGCACTG CTTGGCCTAG CAAGGAAGAG 
CTTAAAGCTT ACACAACTCG CATGGAAGAA GCTGCTAAGC GCGATCACCG CAAGCTTGGT 
CAAGAGATGG ATTTGTTCTC CTTCCCAGAC GAGATTGGCC CAGGCTTAGC CGTATTCCAT 
CCAAAGGGTG CTGCAATTAT TAACGCAATG GAAGATTATT CGCGCGAGCA GCACAGAAAG 
CATCACTACA GCTTCGTACA AACTCCGCAC ATTACTAAGG GTGGCTTATA TGAGACTTCC 
GGCCACTTGC AGTGGTACAA GGATGGCATG TATCCTCCAA TGAAGCTTGA CGAAGAGCGC 
GACGAAAACG GTAACGTAAC TCGCCAAGGT GCTGACTACT ACTTGAAGCC AATGAACTGC 
CCAATGCATA ACTTGATCTT CAAGTCTCGC CAGCGTTCTT ATCGCGAGCT TCCTTTGCGC 
TTGTTTGAGT TTGGTACTGT GTATCGCTAC GAAAAGTCTG GCGTTGTGCA TGGTTTAACT 
CGTGTTCGTG GATTGACTCA GGATGATTCG CACATTTATT GCACTCGCGA GCAGATGCGC 
GATGAGTTGA AGAGCTTGCT TAACTTTGTG CTTGGTCTTC TTAAAGACTT CGGTTTGAAC 
GACTTCTACT TGGAGCTTTC CACTAAGGAT GAGCATAAGT TCGTCGGTTC CGACGAGATT 
TGGGAAGAAG CAACTAATAC TTTGGCAGAG GTTGCTAAAG AGTCTGGTTT GGAACTCGTG 
GACGATCCAG GTGGAGCTGC ATTCTACGGC CCGAAGATTT CCGTGCAAGC TCGAGACGCA 
ATCGGTCGCA CTTGGCAGGT TTCTACTATT CAGCTCGACT TCAACTTGCC TGAGCGCTTT 
AAGTTGGAGT ACATTGCGGC TGACGGTAGC CACCAGCGTC CTGTGATGAT TCACCGCGCA 
CTCTTTGGCT CTATTGAGCG TTTCTTCGCT ATTTTGCTCG AGCATTACGC GGGCGCGTTC 
CCAGCATGGT TGGCTCCAGT TCAGGTAACT GGCGTTCCTG TTGCAGACGA GTTCGCTCCA 
CACTTGCAAA AATTGATTAG CGATTTGGAA GAGAATATGG TTCGTTGCGA AATGGACAAC 
TCTGACGATC GCTTCGGCAA GAAGATTCGT AACGCTTCTA AGTCTAAGGT GCCATTCACT 
TTGATTGCTG GCGAAGAGGA TGTGAACAAC AATGCTGTGA GCTTCCGCTT CCGCGATGGC 
AGCCAATTGA ATGGCGTTCC TGTTTCGCAA GCTAAAGAGT GGATTTTGTC CATCATTAAG 
CAGCGCGTTC AGGTCAATAC TGCAGAAGAT TTCGAGCGCT ACACTAAGTA G 

 

Protein sequence

MAENTISITV NEERKEVDAS FTGAQLFAED KNIIAVRLNG ELRDLYTSLH DGDTVESVAL 
DSEDGIAIMR HSATHVMAQA VQEIRPDAKL GVGPVIKDGF YYDFDVDTPF TPDDLKQIEK 
HMQHIIKESQ SFRRRVVTED EAREEEANQP YKLELIGDKE AALDPAASGE ISKHELSMYD 
NVDREGNKVW SDLCRGPHLP NTRYIKAFKL ERVAAAYWRG SEQNPMLQRI YGTAWPSKEE 
LKAYTTRMEE AAKRDHRKLG QEMDLFSFPD EIGPGLAVFH PKGAAIINAM EDYSREQHRK 
HHYSFVQTPH ITKGGLYETS GHLQWYKDGM YPPMKLDEER DENGNVTRQG ADYYLKPMNC 
PMHNLIFKSR QRSYRELPLR LFEFGTVYRY EKSGVVHGLT RVRGLTQDDS HIYCTREQMR 
DELKSLLNFV LGLLKDFGLN DFYLELSTKD EHKFVGSDEI WEEATNTLAE VAKESGLELV 
DDPGGAAFYG PKISVQARDA IGRTWQVSTI QLDFNLPERF KLEYIAADGS HQRPVMIHRA 
LFGSIERFFA ILLEHYAGAF PAWLAPVQVT GVPVADEFAP HLQKLISDLE ENMVRCEMDN 
SDDRFGKKIR NASKSKVPFT LIAGEEDVNN NAVSFRFRDG SQLNGVPVSQ AKEWILSIIK 
QRVQVNTAED FERYTK