| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0826 |
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| Symbol | |
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| ID | 8709614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 934897 |
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| End bp | 936285 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482926 |
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| Product | recombination factor protein RarA |
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| Protein accession | YP_003374043 |
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| Protein GI | 283783289 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCAGG ATTTATTTGC AGCAAGCAGC GCGCCGAGTA ATGTAACTCG TCCGTTGGCA
GTGCGTATGC GCCCGAGCAG TATTGAAGAC GTGCTAGGGC AGTCGCATGC TCTAAAAGAA
GGTTCGCCTT TGCGTAGGCT TGCAAATCCG CAATCTAAAG GTTCTCTTAC TGCTCCAAGT
TCTGTTGTGT TGTTTGGTCC TCCGGGAGTC GGTAAGACTA CGCTCGCTTA TATTGTTGCT
CGTCAGTCTG GTCGAGTGTT TGAAGAGCTT TCTGCTGTAA CGTCCGGAGT TAAAGACGTT
CGTGCGGTAC TTGATCGCGC GCATGAGCGT TTAGTGAGTA ATGGTCAAGA AACAGTTTTA
TTTATTGACG AAGTTCACCG TTTTTCTAAA TCTCAGCAGG ATGCTTTGCT TCCAAGCGTT
GAAAATCGCG ACGTAACTTT TATTGGTGCT ACTACCGAAA ACCCGAGCTT TTCAATCATT
AAGCCGTTAC TTAGCAGATC AGTAGTTGTT AAACTTGCGT CGCTTAGCGT TGAAGATTTG
CATACGCTTA TTGAACGTGC GCTAACTAGC GAAAACGGTC TTAATAATCA GCTTAAAATC
GACGATGACG CAATAGATTC TATTATTCGC TTAAGCGGGG GGGACGCTCG CAAAACTCTC
ACTATTTTAG AGGCGGCTGC AGGGGCAGTA ACAGGAGATG TTGCGTTGCA GCATGGCAAA
AAGAAGCCTG TAATTACTGA TGATATTGTT TCTAACGTAA TGGATACTAC TACAGTTCGT
TACGACAAAG ATGGCGACGA TCATTACGAT GTGATTTCTG CTTTTATTAA GTCGATGCGC
GGAAGTGATG TTGACGCTTC TTTGCATTAC TTAGCGCGAA TGCTTAGAGC TGGTGAAGAT
CCGCGTTTTA TTGCAAGGCG AATTATGATT GCTGCTGCAG AAGAAGTTGG TATGGCAGCT
CCGCAAATTT TGCAAGTAAC TGTTGCTGCA GCTCAAGCTG TTGCTTTAAT CGGAATGCCG
GAAGCGCGCA TTATTCTTTC TGAAGCTGTG ATTGCTGTAG CAACTGCTCC TAAATCAAAC
GCAAGCTATA ACGCTATTAA TAAGGCTTTG CAAGACGTTG ATGCTGGAAA TATTGGTCAA
GTGCCTCTTC ATTTACGCAA CGCCCCGACT GCTTTGATGA AAAGTTGGGG AAACCATGAC
GGGTACAAGT ATGCTCACGA TTATCCGGGT GCTGTGGCAT CGCAACAGTA TATGCCAGAT
GAGCTAGTTG GTCGCGAATA CTATCAGCCG TCGAATCGTG GCTACGAGCA TGAGCTTACT
CAACGCTTAT CTCAAATCCG TGCCATTCTT CACAATTCTG AAAATAAAAA TAATAAAACT
AATTCGTAA
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| Protein sequence | MEQDLFAASS APSNVTRPLA VRMRPSSIED VLGQSHALKE GSPLRRLANP QSKGSLTAPS
SVVLFGPPGV GKTTLAYIVA RQSGRVFEEL SAVTSGVKDV RAVLDRAHER LVSNGQETVL
FIDEVHRFSK SQQDALLPSV ENRDVTFIGA TTENPSFSII KPLLSRSVVV KLASLSVEDL
HTLIERALTS ENGLNNQLKI DDDAIDSIIR LSGGDARKTL TILEAAAGAV TGDVALQHGK
KKPVITDDIV SNVMDTTTVR YDKDGDDHYD VISAFIKSMR GSDVDASLHY LARMLRAGED
PRFIARRIMI AAAEEVGMAA PQILQVTVAA AQAVALIGMP EARIILSEAV IAVATAPKSN
ASYNAINKAL QDVDAGNIGQ VPLHLRNAPT ALMKSWGNHD GYKYAHDYPG AVASQQYMPD
ELVGREYYQP SNRGYEHELT QRLSQIRAIL HNSENKNNKT NS
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