| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0824 |
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| Symbol | |
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| ID | 8709469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 932097 |
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| End bp | 934409 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482924 |
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| Product | cobalt ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374041 |
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| Protein GI | 283783287 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR01166] cobalt transport protein ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAG CTAAAAAGCA CATGATTGAA AACAATGCGC AAGTAGTGTT GCGAAATATT
TGCTATAGCT ACGATGATGG AAAAACTTGG ACGCTTAATA ATTTAAGTCT TACAATTAAC
GCTGGCGAGC GCTTGGCAAT TGTAGGATTA AACGGTTCTG GTAAGTCAAC CTTGGCAAAA
ATTATTGCAG GTTTAACGGC ACCAGATAGC GGTTACGTTA CATTGTGCGG CGAAAAAGTT
TTTGAAAATA CTACTGCTTG TGCTGAATCA TATAAAAATG CGCGAAAATA TATTGGCGCA
CTTTTCCAAA GTCCTGAAGA TCAGATTATT ACAACAATTA CTGAAGAAGA TGTTGCTTTT
GGACTAGAAA ATTTGCAATT CCCTCAAAAA GCAATGTATA AGCGCATCAG TGAAGCTTTA
AAAACTGTTC ATATGGAAGA TAAACGTTAC GCTGACCCTA GCACTATGAG CGGCGGACAG
CAGCAACGAG TAGCTTTAGC AAGTGCTATT GCTATGAATT CTAAACTGCT TGTTCTTGAC
GAACCTACTT CTATGCTCGA CTCGTTCGCA CGCAAAGACG TTGATGCTTT ATTTGATAAT
TTGCACAAAA ATGGCACTAC TATCGTTCAA ATTACACACA ATTTTGAGGA ATGCAAACGC
GCAAATCGCA TACTTTTACT AGAAAATGGC ATCCTGAAAG AAGTAAGCTT TAATGGTTTA
AAAACTTACT TTTCTAATAT TGAGTTGGCG AATAATCATT TAACTAAAAT TAGCGAGAGT
AAAAACTTAA CAGATAGTAG ACGCAAAGAA AATGAGTCAG ATATCGCTGT AGAAATTTCC
GGACTAACTG TTCAATATGA TAAAACTTCA CCAGCCGTTA TTGACGATTA TTCACTAACT
GTTAAAAACG GCGAAACAGT TGCAATAATG GGCGAAAACG GCTGCGGTAA ATCAACTCTT
GCTAAAACAA TGTGTGGACT GTTAAAAGCC AATTCAGGAA ACATAACAGT ACATGGCATA
TCTGTTAGAG GTAAAACATC TAAAATAATA CGACAAAAAC TACATCAAAC AATTGGCTAC
GTTATGCAAC TGCCAGAACA ACAGCTTTTT GCTGATACAG TACGGAACGA TGTCGCTTAT
GGACCAAAAA ATTTTGGGCT GAAAGGCAAT GCTCTTAAAG AACGTGTGGA TGAAACCCTA
CGCTTATTGA GCCTTGAGAA TTTGGCTGAA AAATCACCTT TTGCGCTTTC TGGAGGTCAG
CAGCGTCTTG TTGCAATAGC TGGCATTTTA GCTTGCAAGC CACGCGTGCT CGTACTGGAT
GAGCCAACAG CTGGATTAGA TTTTGAAGCT GCGTTACGTA TTCGAGAAAT TCTTGGAACG
CTACACAATC AAGGCGTAAC CATAATACTT ATTACGCATA ATCTTCAAGA AGCAGAAGAT
TTAGGCGCAA GATTAGTAAC ATTAAAAGCA AATAATAAAG CAAGCAACAC AGCAAAAAAT
ACTGAAAATA ACAAAAACAA AGAAAGTTCC GCAAAAGCAA AAACAACTTC GCTACTTAAA
TCTTTTGACC CACGCGCGAC GCTGCTATCA TGCTTTATTC TTATGCTAAG TGCTTTTAGT
ATTACTAACT ACATACAGTT AGCTATTCTT GCTTTTGTAA CATTTACTCT AACTGTTGCT
GCAAAAATAC CATTTGTTAA GCTTATTGCT TCACTGCACA TGATTATTGC GGTATTTGTT
TTCTCCGGAT TACTTAACAT TCTGGCAGTG CGAACCGGCA CAGTGCTAGC AAATATTGCA
ACTATTCCTA TTACAACTGA TGGAATTAAT TACGCAATAC TTTTTGCAAC ACGATTCTCG
CTTGTTATTA TCATTGGAGC AATTCTAGTA CTAACAATGA GTCAGACAAC GCTTAACGAA
TCTTGCACAC GATTACTATC ACCACTTCGA CATATTGGAA TACCAACGCA AGAAATAGCA
CTTATTATGA GCCTAGCGCT ACGGTTCTTA CCAACACTCA GTGCAGAAGC GCACTCTGTG
GCACTAGCGC AAATCGCTCG AGGAAGTAGC ATTCGAGATG GTTCTTTTAA GCAACGAGTA
CACGCTATAA CAGCTTTAAT AGTGCCAGGT TTTGCAGGAG TAATTCGCCA TGCTGACACT
CTTGCGCTCG CATTAGATGC ACGCTGTTAC ACGCCTGGAG CTGAAAGAAC TCACTTGCAC
TCATGGAAAA TGCGTATAAA AGATGTGCTG CTATCAGTAG TTACTCTTGG TGTTGTAAGC
GCGATTATTG TGTGCAAAAT GCTACCTTTG TAA
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| Protein sequence | MNEAKKHMIE NNAQVVLRNI CYSYDDGKTW TLNNLSLTIN AGERLAIVGL NGSGKSTLAK
IIAGLTAPDS GYVTLCGEKV FENTTACAES YKNARKYIGA LFQSPEDQII TTITEEDVAF
GLENLQFPQK AMYKRISEAL KTVHMEDKRY ADPSTMSGGQ QQRVALASAI AMNSKLLVLD
EPTSMLDSFA RKDVDALFDN LHKNGTTIVQ ITHNFEECKR ANRILLLENG ILKEVSFNGL
KTYFSNIELA NNHLTKISES KNLTDSRRKE NESDIAVEIS GLTVQYDKTS PAVIDDYSLT
VKNGETVAIM GENGCGKSTL AKTMCGLLKA NSGNITVHGI SVRGKTSKII RQKLHQTIGY
VMQLPEQQLF ADTVRNDVAY GPKNFGLKGN ALKERVDETL RLLSLENLAE KSPFALSGGQ
QRLVAIAGIL ACKPRVLVLD EPTAGLDFEA ALRIREILGT LHNQGVTIIL ITHNLQEAED
LGARLVTLKA NNKASNTAKN TENNKNKESS AKAKTTSLLK SFDPRATLLS CFILMLSAFS
ITNYIQLAIL AFVTFTLTVA AKIPFVKLIA SLHMIIAVFV FSGLLNILAV RTGTVLANIA
TIPITTDGIN YAILFATRFS LVIIIGAILV LTMSQTTLNE SCTRLLSPLR HIGIPTQEIA
LIMSLALRFL PTLSAEAHSV ALAQIARGSS IRDGSFKQRV HAITALIVPG FAGVIRHADT
LALALDARCY TPGAERTHLH SWKMRIKDVL LSVVTLGVVS AIIVCKMLPL
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