Gene HMPREF0424_0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0820 
Symbol 
ID8709706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp929353 
End bp930126 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content44% 
IMG OID646482921 
ProductROK family protein 
Protein accessionYP_003374038 
Protein GI283783284 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGACA CTGCACAAGC ATTTGGCGTC GATATTGGTG GATCCGGTAT TAAGGCTGCT 
CCAGTAAATT TGGAAAAGGG AGAGTTCGCA GAACCTCGAT ACAAAATTCT CACTCCTACG
GTTTCTACGC CTCAAGCAGT TGCAGATATT GTTCGTCAGC AGCTTGAACA TTTTGAAGTA
CCTGCAGATG TTCCTGTTGG AATTGCATTC CCTGCTCCAA TTAAGCCTGG TAAGAAGCTC
GATTTTATGG CAAATCTTGA CCAGTCTTGG ATTGGTGTTG ATGTTACTGA AGTCTTTAGC
GAGGCTTGTG GTCGTCCTGT AACAGTAGTT AACGATGCCG ATGCTGCTGG TTTAGCTGAG
CAGCGTTTTG GTGCGGCGAA AGACAAGGAT GGCTTGGTTA TTGCTACTAC TCTTGGCACT
GGTATCGGCA CGGCTTTGAT TTACAACGGT GTGCTTATTC CAAACACTGA GCTTGGTCAT
ATTCAGCTTG AAAAAGGTAA GGGCGATGCT GAAAAGTACG CTGCTTCTTC TGTTCGTGAA
AAGTTGGATA TGGGCTATAA GAAGTGGGCT AAGCGTTTGA CTAAGTACTA CGGCCTGATG
GAAAAGTATT TCAACCCAGA TTTGTTTGTT GTCGGTGGCG GTGTTAGCCG CGTAAGCGAA
AAGTTCTTGC CGCATATCGA TATTAAAACT CCTATTGTTG TTGCAACATT GCATAATGAG
GCTGGAATTA TTGGTGCAGC TTACTATGCA ATGCAAAAGA TGCAGCAAAA CTAA
 
Protein sequence
MIDTAQAFGV DIGGSGIKAA PVNLEKGEFA EPRYKILTPT VSTPQAVADI VRQQLEHFEV 
PADVPVGIAF PAPIKPGKKL DFMANLDQSW IGVDVTEVFS EACGRPVTVV NDADAAGLAE
QRFGAAKDKD GLVIATTLGT GIGTALIYNG VLIPNTELGH IQLEKGKGDA EKYAASSVRE
KLDMGYKKWA KRLTKYYGLM EKYFNPDLFV VGGGVSRVSE KFLPHIDIKT PIVVATLHNE
AGIIGAAYYA MQKMQQN