Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0820 |
Symbol | |
ID | 8709706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 929353 |
End bp | 930126 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646482921 |
Product | ROK family protein |
Protein accession | YP_003374038 |
Protein GI | 283783284 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGACA CTGCACAAGC ATTTGGCGTC GATATTGGTG GATCCGGTAT TAAGGCTGCT CCAGTAAATT TGGAAAAGGG AGAGTTCGCA GAACCTCGAT ACAAAATTCT CACTCCTACG GTTTCTACGC CTCAAGCAGT TGCAGATATT GTTCGTCAGC AGCTTGAACA TTTTGAAGTA CCTGCAGATG TTCCTGTTGG AATTGCATTC CCTGCTCCAA TTAAGCCTGG TAAGAAGCTC GATTTTATGG CAAATCTTGA CCAGTCTTGG ATTGGTGTTG ATGTTACTGA AGTCTTTAGC GAGGCTTGTG GTCGTCCTGT AACAGTAGTT AACGATGCCG ATGCTGCTGG TTTAGCTGAG CAGCGTTTTG GTGCGGCGAA AGACAAGGAT GGCTTGGTTA TTGCTACTAC TCTTGGCACT GGTATCGGCA CGGCTTTGAT TTACAACGGT GTGCTTATTC CAAACACTGA GCTTGGTCAT ATTCAGCTTG AAAAAGGTAA GGGCGATGCT GAAAAGTACG CTGCTTCTTC TGTTCGTGAA AAGTTGGATA TGGGCTATAA GAAGTGGGCT AAGCGTTTGA CTAAGTACTA CGGCCTGATG GAAAAGTATT TCAACCCAGA TTTGTTTGTT GTCGGTGGCG GTGTTAGCCG CGTAAGCGAA AAGTTCTTGC CGCATATCGA TATTAAAACT CCTATTGTTG TTGCAACATT GCATAATGAG GCTGGAATTA TTGGTGCAGC TTACTATGCA ATGCAAAAGA TGCAGCAAAA CTAA
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Protein sequence | MIDTAQAFGV DIGGSGIKAA PVNLEKGEFA EPRYKILTPT VSTPQAVADI VRQQLEHFEV PADVPVGIAF PAPIKPGKKL DFMANLDQSW IGVDVTEVFS EACGRPVTVV NDADAAGLAE QRFGAAKDKD GLVIATTLGT GIGTALIYNG VLIPNTELGH IQLEKGKGDA EKYAASSVRE KLDMGYKKWA KRLTKYYGLM EKYFNPDLFV VGGGVSRVSE KFLPHIDIKT PIVVATLHNE AGIIGAAYYA MQKMQQN
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